barSeed - Barley Seed Development Database

Probe CUST_6548_PI390587928

Source Contig U35_4400

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6548_PI390587928	Hv_44K_v2	GCCATGTTATCTTGTTACATACTGTGCGCTCGAGATCATTATTAATGGAATTCTTTCATT	619	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.035	1.894	1.691	0.828	0.262	0.229
Raw	13100.690	36584.247	28350.700	22176.340	2393.960	2303.353

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64151.1	1040	2e-24	870 - 929	100	60 / 60	plus	ABC11825
MLOC	MLOC_64151.2	803	2e-24	651 - 710	100	60 / 60	plus	ABC11825
MLOC	MLOC_64151.3	703	2e-24	551 - 610	100	60 / 60	plus	ABC11825
JLOC1	JLOC1_42086.1	752	8e-25	115 - 174	100	60 / 60	minus
Harvest21	ABC11825	669	3e-25	589 - 648	100	60 / 60	plus	ABC11825
Harvest35	U35_4400	700	3e-25	620 - 679	100	60 / 60	plus

Contig Sequence (700 bp)

>U35_4400 700 Hv_44K_v2
TCGAGCACTGTTGGCCTAGTGGACAACTCGCAGCACAGCACACCTCTCCCTCCCACAGCT
TCTGTATACAGAGCAAGAGCTTTCACTACGTCCTCTTCTGCTAAGCTCAGCCAGCTTTCC
CTCCGTCCACCACCACCACTACTCCAATGGCTCGCTACGCCGTGGTCGCCGCCATCGTCG
CCGTCCTGGCCATCACCGCCGCCGCGCAGGGCCCCACGCCGGCGCCCAAGATGGCCCCGC
TGCCGGCGCCTCCGACGAGGTCCCCCCCGGTCGCCACGCCGCCGACTGCATCGGCGCCGT
CCCCGATGGCCTCTCCCCCGGCTCCGCCCACCGACGCCCCCGTCGGCGCTCCTTCCGCGA
TGACGCCTTCCTCGGTCTCCGGCACCCCCATGGGCGCACCTGCCGGCGCACCAACCGGCA
CCACCCCCGCCAGCTCCGCCGTCTACACCTCCTCCGTCAGCTTCGTCGCCGTCGCCGGTG
CCGTCGCCGCCGCCGTCCTGTTCTAGATGCAGCGGCCCTCGCTCGACCGCCGCGGGAGTG
CCACTCTGTTTTATTGCTAGTTCTGTTGTTTATACAACGAGATTCATTTTCTAGAGGCTG
CGGAGAGTGACATGACACTGCCATGTTATCTTGTTACATACTGTGCGCTCGAGATCATTA
TTAATGGAATTCTTTCATTTGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4400 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None