barSeed - Barley Seed Development Database

Probe CUST_6482_PI390587928

Source Contig U35_15948

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6482_PI390587928	Hv_44K_v2	CATCCATCGCATATCTCGCTTTGGTTTGTTGTTGCCAATGATGTGTTTCAGTTCAAAAAA	550	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.989	2.313	1.866	1.153	0.424	0.452
Raw	262.155	977.718	666.179	708.079	82.325	99.011

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22943.1	762	9e-22	540 - 594	100	55 / 55	plus	ABC07650
MLOC	AK360133	780	3e-21	727 - 780	100	54 / 54	plus	ABC07650
JLOC1	JLOC1_15878.1	762	5e-22	540 - 594	100	55 / 55	plus
Harvest21	ABC02655	1056	2e-22	551 - 605	100	55 / 55	plus
Harvest35	U35_15948	621	3e-25	551 - 610	100	60 / 60	plus

Contig Sequence (621 bp)

>U35_15948 621 Hv_44K_v2
GCGTGCCCGGGCTCGGCAACGGCGCGCGACGTCCCGCGCACCGCCGAGGAGGGCGCGGTG
AGGCGGCCGGAGACGATCCAGGAGGGGACGGTGCTCATCCCGGGGATCGGACGGTACGAG
CTGGGCAGCCACTACAGGCCGGACATCGGCGGGCTGGACCACAGCATCCCGGCCGCCGCC
CACGGGCAGTTCATCCCCGGCGCCGACGACACCTGGGTGCCCAACCCCGGCTTCGAGGTG
CCCAACCCATTCCGCCCCGCAGCCACCACCGAGTCCCCCTGATGGGTCGGTCAAGCCGGC
CGGCCAGCACGCCGTCCGTCCGCGTTAGACCCATCGACCGATGGGTAGCTACTAGCCTGC
CATGAACCAATCTCCGCTAGCTTTTTTTGGTTGCTACAATAAAATACTAGCTGCTACACG
TACGTAGGCAAGGCATGCGTATGCATGAACCAGCGGCCGCGTGCGTGCGACCGCGCGCGC
TGTCTCGACGTTTTGTGTGTGATTCAAGAGTGTACCCGTATGGGGTATGCGTGGATGCGT
AGGAAGGAAGCATCCATCGCATATCTCGCTTTGGTTTGTTGTTGCCAATGATGTGTTTCA
GTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15948 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None