barSeed - Barley Seed Development Database

Probe CUST_6481_PI390587928

Source Contig U35_15949

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6481_PI390587928	Hv_44K_v2	GGCGTGAACATTGAGCAAAACTCTAAAACACAATACGTTGTACGAATATATAGGGTTTTT	593	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57751.1	1112	2e-24	174 - 233	100	60 / 60	minus	ABC07650 ABC30049
JLOC1	JLOC1_37478.1	923	8e-25	174 - 233	100	60 / 60	minus
Harvest21	ABC30049	207	3e-25	125 - 184	100	60 / 60	plus	ABC30049
Harvest35	U35_15949	676	3e-25	594 - 653	100	60 / 60	plus

Contig Sequence (676 bp)

>U35_15949 676 Hv_44K_v2
GAGGCAACAGCCAGCGATCGAGACAACCACACGAGGCTCACTTAGGCTAGCTACCACCAG
GCGCGCCTGATCACAGCTAGCCAGCCACTCGATCGATCGGCATGGCTAACAAGTTGGCGT
CCCTGCTGATCCTCGCGGTGCTGGTGGCCGCGGCGTGCTCGGGCTCGGCGGCGCGCGACG
TCCCGCGCGCCTCCAAGGAGGGTGCGGTGAAGCGGCCGGAGACGTTCCAGGAGGGGACGG
TGCTGATCCCGGGGATCGGGCGGTACGAGCTGGGCAGCCACCACATGCCGGACATCGGCG
GGCTGGACCACAGCATCCCGGCCGCCGCCAGCGGCCAGTTCATCCCCGGCGCCGACGACA
CCTGGGTCCCCAACCCCGGCTTCGAGGTGCCCAACCCATTCCGCCCCGCCTCCACGGAGT
CTCCCTGATGGATCGAGCCGGCCGGCCAGCAGCACCGGCACCGCGAGCGCGCTGACGCCG
TCGACGTTTTGTGTGTGATTCAAGAGTGTACGTGTACATGCTATGGACTCGCTGTGTTTC
TTGTTGCCAATAAAGTGTTTCAGTCAAAAAAAAAAAAAAAAGTACACACAAGGGGCGTGA
ACATTGAGCAAAACTCTAAAACACAATACGTTGTACGAATATATAGGGTTTTTTTCAGGA
AAAAAAAAAAAAAAAA

Homology of Contig U35_15949 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None