barSeed - Barley Seed Development Database

Probe CUST_6465_PI390587928

Source Contig U35_15950

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6465_PI390587928	Hv_44K_v2	GCATGTCTCGCTTGGTTTGTTGTTACCAGTGTAATGTGTTTCAGTTCAGTACGCTTTTTT	716	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_218.1	1469	2e-24	963 - 1022	100	60 / 60	plus	ABC07650 ABC40901
JLOC1	JLOC1_150.1	949	8e-25	720 - 779	100	60 / 60	plus
Harvest21	ABC07650	607	3e-25	507 - 566	100	60 / 60	plus	ABC07650
Harvest35	U35_15950	827	3e-25	717 - 776	100	60 / 60	plus

Contig Sequence (827 bp)

>U35_15950 827 Hv_44K_v2
ACCACACAACGAAAGCAACAGCCAGCGATCGAGACAGCAAGAAAAGCTCACTCACTCAGC
TAGCTACCACCAGTCCCGATCACAGCGAGCTACCCAGCCACTCGACGCGGTCGGCATGGC
CAGCAAGTCGGCGTCCCTGCTGATCCTCGCGGCGCTGGTGGCCGCGGCGTGCCTCGCCGG
GCAGGGCTCGGCGGCGCGCCATCTGCCGGCAGAGAAACCCGCGGAGGACGTGGTGAAGCG
ACCGGACACGTTCCAGGAGGGGACGGTGCTGATCCCGGGGATCGGGAGGTACGAACTGGG
CACCCACTACATCCCGGACATCGGCGGGCTCGACCACAGCATCCCGGCCGCCGCCAACGG
GCAGTTCATCCCCGGGGCCGACGACACCTGGGTGCCCAACCCCGGCTTCGAGGTGCCCAA
CCCTTTCCGCCCCGGCTCCGACTCTCCCTGATGGGTCGAGCACGTCCACGCTACGCCCAT
CGCCCGTCCACACGTCGCACCCATCCATCTATTTCGTAGCTAGCCTGCTATAAATCGATT
TCGCTAGCTTTTTTGGTTGCTACTACAATAAAATAGCCGCTACTACATAGCCATGCATGC
ATGTCTGATGCATGCATGTGGCTGCGACTGCCTGCGCGCCGTCGACGTCTCGTGTTTTGA
TTCAAGTGGTACGTGTGTATGGGATATGGATGGATGCGTAGGAAGAAGTATCCATCGCAT
GTCTCGCTTGGTTTGTTGTTACCAGTGTAATGTGTTTCAGTTCAGTACGCTTTTTTTAAT
GATGAGAAATGGTTTAGCTTGATAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_15950 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None