barSeed - Barley Seed Development Database

Probe CUST_6430_PI390587928

Source Contig U35_27941

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6430_PI390587928	Hv_44K_v2	GCCCGTGTGTCGACATAGAAATAGTTCTTCACATATGTGTATATAGAAAATAGCAAAATC	622	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66029.1	1977	2e-24	1668 - 1727	100	60 / 60	plus	ABC09219 ABC23161
JLOC1	JLOC1_43496.1	1764	8e-25	1647 - 1706	100	60 / 60	plus
Harvest21	ABC23161	742	3e-25	61 - 120	100	60 / 60	minus	ABC23161
Harvest35	U35_27941	742	3e-25	623 - 682	100	60 / 60	plus

Contig Sequence (742 bp)

>U35_27941 742 Hv_44K_v2
AAGACGGCACGGCTGCTGCTCCAGGACAACCTGCAGCTCAGGCTGGCCCTCCCCGTGGAG
TGCCGGGACAACGGGTACCGGCTGTCGTACATCTGGTCGGACGATGCAGAGGTGAGGGAG
ACGCTGGGCATCCGCGACGGCTCCGTTGGCGCGTGGAGCCGGTGCACCACGCTGGCGCAC
TTCCGGCACGACGTGCGAAGCGTAGTACCGTACCATGTCGACCTGACGCGCCGGGGCTAC
CGGGCGCTAGTGTACAACGGTGACCACGACCTGGACTTCACCTTCGTCGGCACGCAGGCA
TGGATCAGGGCGATGGGCTACCCCGTGGTTGCGCCCTGGAGGCCGTGGTACTCCAAGCAG
CAGGTCGCGGGGTTCACGACGGAGTACGCCAACAACCTCACCTACGCCACCGTCAAGGGC
GCCGGGCACACCGCGCCGGAGTACCGCCCCAAGGAGTGCCTTGACATGCTTGACAGATGG
ACATCGCCCGCCGGCAAGCTATGACTACGCTCCGTTCCAAACCACGTATTTCGTGGATGA
ATATTTCGTTTCACAAAAATCTTGCAATTGTGCTGCAAGTCAAATGGCTCGCGTGTGTGT
GTAGTATTTGAAAAAAAAATTGGCCCGTGTGTCGACATAGAAATAGTTCTTCACATATGT
GTATATAGAAAATAGCAAAATCATCATGTACTCAACGGTCAAATTTGNATGGGGTTTGAA
GTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_27941 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g01134.2	375	4e-86	protein\|OsSCP46 - Putative Serine Carboxypeptidase homologue, expressed
Brachypodium v1_2	Bradi3g21550.1	462	4e-89
Arabidopsis v10	None