barSeed - Barley Seed Development Database

Probe CUST_6405_PI390587928

Source Contig U35_3814

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6405_PI390587928	Hv_44K_v2	CTCAATCCGGGGTGAACCTGCAAGCTACAATGTATCAAAATATACGTTGGTTGTAAAAAA	526	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1826.1	1023	9e-22	7 - 64	98	57 / 58	minus	ABC17982 ABC42758
JLOC1	JLOC1_1106.1	1342	5e-22	1230 - 1287	98	57 / 58	plus
Harvest35	U35_3814	656	3e-25	527 - 586	100	60 / 60	plus

Contig Sequence (656 bp)

>U35_3814 656 Hv_44K_v2
GCGCGCACACCATCGGGCGGTCGCAGTGCCAGTTCTTCCGCAGCCGCATCTACAACGAGC
GCAACATCAACGCCACCTTCGCGGCGCTGCGGCAGCGGACGTGCCCGCGGTCCGGAGGCG
GCAGCAGCCTCGCGCCCTTGGACGCGCAGACCGCCGACGGGTTCGACAACGCCTACTACC
GGAACCTGGTGGGGCAGCGCGGCCTCCTGCACTCGGACCAGGAGCTCTTCAACGGCGGGT
CGCAGGACTCGCTGGTCAGGCAGTACAGCAGCAGCCCCGGGCAGTTCTCCGCCGACTTCG
TCACGGCCATGCTCAAGATGGGCGGCCTGCTGCCGTCGCCCGGGACGCGGACGGAGGTCA
GGCTCAATTGCAGGAGGCCCAACTAAATTAAGGGCAAGTAGACGTAACAAGTGTGCTGAA
TAATGGTTGATGCCTTGGAAAGACCAGGCATTGGTCAGGTTCACGTATACTGTATGTATG
TATGTATGTATGTATAAACAACACGAAATGTACAAACGCTCGTTTGCTCAATCCGGGGTG
AACCTGCAAGCTACAATGTATCAAAATATACGTTGGTTGTAAAAAAAAAAAAAAAAACCT
CATCATTAATACAGAACAATGGAATGGTACCATCATAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_3814 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g35520.1	364	4e-67	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g38290.1	320	2e-67
Arabidopsis v10	None