barSeed - Barley Seed Development Database

Probe CUST_6380_PI390587928

Source Contig U35_3839

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6380_PI390587928	Hv_44K_v2	AATAGTGATTGGATGCTTTACTGCTCGACTGTTTGCGGCATGGAATGCTGAGAGAGATTG	1467	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.451	1.377	1.263	0.908	0.331	0.295
Raw	2203.280	3308.431	2618.080	2931.186	379.711	368.238

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC08634	1542	3e-25	1468 - 1527	100	60 / 60	plus	ABC08634
Harvest35	U35_3839	1542	3e-25	1468 - 1527	100	60 / 60	plus

Contig Sequence (1542 bp)

>U35_3839 1542 Hv_44K_v2
GAGCTAGGACTGCATTTCCTCTTGCTCTGATATTATCTCCTACTCGTGAGCTATCAGTAC
AAATTCATGAAGAAGCAAAGAAATTTGCATACCAGACTGGTGTTAAGGCTTGTGTTGCAT
ATGGTGGAGCACCAATTCATCAGCAGTTGAGGGAACTGGAAAGAGGTGTTGATATACTTG
TGGCAACTCCTGGTCGTTTGATGGATCTGCTGGAGAGAGCTAGAGTATCACTGCAAATGG
TGAATTACTTGGCTCTTGATGAAGCTGACCGGATGCTTGATATGGGGTTTGAGCCACAGA
TACGCAAGATTGTTGAGCAGATGGACATGCCCCCTCGTGGTGTGAGACAGACTATGCTGT
TCAGTGCTACTTTTCCAAAGGAAATACAACGTCTGGCGTCAGATTTCCTTGCAGACTACA
TCTTCCTTGCTGTTGGAAGAGTTGGTTCAAGTACCGATTTGATTGCTCAAAGGGTAGAGT
TTGTCCTTGAAGCGGATAAAAGAAGTTACCTCATGGACCTTATTCATGCACAGAAGGCTA
ATGATGTTCCTGGAAAGAATTCTCTTACTTTGGTCTTTGTGGAGACAAAGAGGGGCGCTG
ATGCTTTGGAGAACTGGTTATATACAAATGGATTCCCCGCAACAAGTATTCATGGAGATC
GTACACAACAGGAAAGGGAGTATGCCCTTAGATCCTTCAAGAGTGGAGCAACACCCATCC
TTGTTGCAACTGATGTTGCTGCTCGTGGGCTTGACATACCAGATGTTGCCCACGTCATCA
ATTTTGATCTGCCAAATGACATAGATGACTATGTTCACCGCATTGGGAGAACTGGAAGAG
CTGGGAAGTCTGGTTTGGCAACTGCATTTTTCAATGAGGGCAATATGTCACTGGCCAGGC
CGTTATGTGAACTGATGCAGGAAGCCAATCAGGAGGTTCCTCAGTGGCTGGAGCGCTATT
CTGCCCGTTCCTCGTTTGGAGGTGGCGGAGGAGGCAGAAACCGCAGATCAGGCGGTGGCG
GTGCTCGGTTTGGTGGACGTGATTTCCGTCGTGACACAAGGGGCGGTGGTGGTGGAGGAG
GTGGCGGCTACGGTGGTGGCGGTGGCGGTTATGGTGGTGGTGGAGGTTATGGTGGAGGCG
CGTCTAGCTCGTGGGACTGATAGATTCACCTGTTGATATGGTGAGAATTGAAATGAAACC
GATGGATGGTATTCTATTGACTTAGCTGAAAACAGATATTGGGGTTTGTGGTCACCGTGG
TGTGGGTATGGTGCCCTTGCCCCCATTTACCTTATTTTGTGGCTGGTTGTTGTCACTGCA
CTTGTGTTTTCCGTGTACTGGTTATTTTCTGACTTGCATCAAAGTCCGGGTGGGCTAATT
TCCTGTGTTGCTGCTGCTGTAGTTTTGTAGTCATTGTTGAGTTGGTTGGTTGGTTGGTGG
TCATTGTTGCGCTCCTACTTTACTAGCAATAGTGATTGGATGCTTTACTGCTCGACTGTT
TGCGGCATGGAATGCTGAGAGAGATTGCTTGCCCTGTGGAAT

Homology of Contig U35_3839 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g59050.1	638	protein\|DEAD-box ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi1g04860.2	615
Arabidopsis v10	AT2G42520.1	633	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr2:17705382-17708744 FORWARD LENGTH=633