barSeed - Barley Seed Development Database

Probe CUST_6371_PI390587928

Source Contig U35_3848

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6371_PI390587928	Hv_44K_v2	GGATAACTCTGAAATAATGGTAACTGAGGCAGCTATTAGCAATGTGTTAATTGAGACTCT	540	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22469.6	1855	2e-24	1274 - 1333	100	60 / 60	plus	None
MLOC	MLOC_22469.12	2279	2e-24	1698 - 1757	100	60 / 60	plus	ABC02510 ABC04560
MLOC	MLOC_22469.1	1618	2e-24	1274 - 1333	100	60 / 60	plus	None
MLOC	MLOC_22469.7	1714	2e-24	1133 - 1192	100	60 / 60	plus	None
MLOC	MLOC_22469.8	1953	2e-24	1372 - 1431	100	60 / 60	plus	None
MLOC	MLOC_22469.10	1808	2e-24	1227 - 1286	100	60 / 60	plus	None
JLOC1	JLOC1_15583.14	1435	8e-25	854 - 913	100	60 / 60	plus
JLOC1	JLOC1_15583.12	1346	8e-25	765 - 824	100	60 / 60	plus
JLOC1	JLOC1_15583.9	1714	8e-25	1133 - 1192	100	60 / 60	plus
JLOC1	JLOC1_15583.8	2614	8e-25	2033 - 2092	100	60 / 60	plus
JLOC1	JLOC1_15583.6	1616	8e-25	1035 - 1094	100	60 / 60	plus
JLOC1	JLOC1_15583.5	1953	8e-25	1372 - 1431	100	60 / 60	plus
Harvest21	ABC08753	667	3e-25	541 - 600	100	60 / 60	plus
Harvest35	U35_3848	651	3e-25	541 - 600	100	60 / 60	plus

Contig Sequence (651 bp)

>U35_3848 651 Hv_44K_v2
GAAGGTGTACGCCGTCGAGGCCAGCAGCGTGGCGGAGCACGCCCGCGAGCTCGGCCGCGC
CAACGGGGTCGCCGACATCGTCGAGGTCATAGAGGGGACCATGGAGGACATTGTGATGCC
AGAGAAAGTCGATGTCATTATCTCTGAGTGGATGGGCTACTATCTCTTGAGAGAGTCCAT
GTTTGATTCCGTCATATGCACACGGGACCGTTGGTTGAATCCAGGTGGTGTTATGTCAGT
AAACAGAAACATTTTTTAATTCTAAGTTTGCTAAGTAACTTGTATTGTACTTGTTTGGAA
TTTTTTTACACAGAACTGTGACTGTTATATGCAGCCTGATCAACTAATCTTTAAATGAAG
TTAAATTGACAAACACATGATCATAAATTTTGTTTTTGAAAGATGGCAATACCCTTTCTG
ATTTTGTTGTTTGCACAATCAAAACACAGATGTTTTCTTCTCAGTTTGATCTCTTGATAT
GGCAGTAATGCTAGTGAGACTCTTTAACTTCTTAACTTCCTTGGTTGTTATGTATTAATT
GGATAACTCTGAAATAATGGTAACTGAGGCAGCTATTAGCAATGTGTTAATTGAGACTCT
NTACAGGCAATTGCTTTAACTGACTGTTCATAGCTTGCGTAATCTGGTCAA

Homology of Contig U35_3848 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None