barSeed - Barley Seed Development Database

Probe CUST_6360_PI390587928

Source Contig U35_3860

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6360_PI390587928	Hv_44K_v2	ATTTTGATTGTTACAGAGGCAGAATCCATTGCATCAAACGAGGCAAAGGAGGAGGTGACC	401	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368607	3866	2e-24	356 - 415	100	60 / 60	minus	ABC09435
MLOC	MLOC_57983.2	2802	2e-24	549 - 608	100	60 / 60	minus	ABC09435
MLOC	MLOC_57983.5	1882	2e-24	505 - 564	100	60 / 60	minus	ABC09435
MLOC	MLOC_57983.1	3089	2e-24	572 - 631	100	60 / 60	minus	ABC04734 ABC09435 ABC13000
MLOC	MLOC_57983.4	2845	2e-24	525 - 584	100	60 / 60	minus	ABC09435
MLOC	MLOC_57983.3	1908	2e-24	525 - 584	100	60 / 60	minus	ABC09435
JLOC1	JLOC1_37642.3	2723	8e-25	530 - 589	100	60 / 60	minus
JLOC1	JLOC1_37643.2	2149	8e-25	1561 - 1620	100	60 / 60	plus
JLOC1	JLOC1_37642.2	2240	8e-25	530 - 589	100	60 / 60	minus
JLOC1	JLOC1_37642.1	2698	8e-25	530 - 589	100	60 / 60	minus
JLOC1	JLOC1_37643.1	2553	8e-25	1965 - 2024	100	60 / 60	plus
Harvest21	ABC09435	1699	3e-25	402 - 461	100	60 / 60	minus	ABC09435
Harvest35	U35_3860	1699	3e-25	402 - 461	100	60 / 60	minus

Contig Sequence (1699 bp)

>U35_3860 1699 Hv_44K_v2
AACAACTGCCCCGCCGTCCTCTTGAGTCTTGTCGTCAGATCCGCGTCATATATCCAATAC
ACCGCCTTCCCCGTCGTCTCCGATCTCATCACATCACCGTCGCCGGAGCGAGGTGGAGAA
GAGGTCGTCTGCGCGCGGGATGGAGTCAGCGGCGAACAAGCGCAGCAGCATCGAATCCGG
CGCCACGGCGGCCGAGGAGGAGGAGAAGGGCCGCAAGAGGGGCCACGGATCCACCGCGCT
GTTCGTAGCGGTGGACTACGCCTTCCTGCTCGCCTTCGCCGGGTTCCTCTCCTACCTCGT
TGTCTCCCAGATCCTCCCTTCCGCCACCTAGATAGGTCGCCCGTCGCCGTTTGCTTCTGG
ACGCGATGCGTGTGAAATCCCGAGATCTTGGCTCGGGATACGGTCACCTCCTCCTTTGCC
TCGTTTGATGCAATGGATTCTGCCTCTGTAACAATCAAAATATGAGATGACAAGTAGCTC
TGATGCTGTTTCTTTGCTATTTTGCATGACGAATTGTGATGCTCCAGTCTTCCCGTGTTC
TAGTAGAATAATAAAATGCTCCAGTGTTCCTTTGTTCATGGCTTGAACTCTTCACTGGAT
GGTGTCCACTGTATATCAGATTGATTGTTCATGTTTACGTTATTAGTATGTTGGAGATGG
ATAATATTTCCAGGAACAAGAAGCTCAGGTGAATCTGAAGCGTCCCTTCTTCAGATGAGC
GCACAAGGCTTCCTGCTTTCCGCCTTTGGTTCTTTCAAAATCGCGCAATTTTTTAGGCAA
AGCAACGACTTAATTTCGACCAAGATTGACCTTTTCCATTTCCTTCCCAAGGGGAAGAGA
CCAAAAGAACCTTGTTACAACATTTCACATCAATAGTCGCATAATATCTGACTAGAGATG
AGAAACTCTCCATGAGGCTACCAGCTAACAGCTACGGTGGTGATTTGATCAGTTAGCACA
TTCATAGCATTTTCCTGGATAACCACAGCATTGTTTTGCAGTTGAAGTCTAAGGCAATAG
CTGAACAGCTGAGATGGATGGGATCTTCTCTCTGAGCTTCTGTGCTACAGCAACTCGGAT
GGCCGCCACACCTGCTGCAGGGCCCCTGAGTTGGACTTTCACGAAGAATCTGTTGATCGC
GACAAACCTGAGATTACCGCCTCCTGCGCCAGTGAGGTATGGCCTGATCTCATCGAGTAC
CTTCTCAACATTCTCTTTCTTCAGCTTAAGCCCAGCCTCGTTGTCCGTGATAGCTTCAAC
TGCAGCAATCTCTGGTATTTCATCCATCAAACGCCGCTGAATGCCCATCCTCATGGTCAT
CACGGAGCCCGGGCACGCCCCGCATGCTCCTTGCAGCTTCAGCCTCACCACATTCCCGTC
GATCTCATGCAAGGCAACGTTGCCTCCGTCTGCCATGAGATACGGCCGGACTTGATCCAG
AACAAGCTCCACATTTTCAGCGGTTAATGACGAATCGACCACTGGATTCGGGTCGGCAAT
GGGTTGAACAACTTGTGGCGGCGCGCGAGTGGACACGGCTACCGAAGTTGCCGCGGCAGA
GGGCGTTCTCCCGCGCAAGCGCGACGAGACGACGACCTTGAAGGAGGAGGAGGAGGTAGA
AGGCGAGGTGGTCGGCGCCCACGTCGACGCCGCTACCGCCGCCTGCATCCCCGGTGCCCG
ACTCCAATCGGCCCTGGAG

Homology of Contig U35_3860 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g07916.1	229	6e-63	protein\|nifU, putative, expressed
Brachypodium v1_2	Bradi4g41260.1	243	1e-70
Arabidopsis v10	AT5G49940.1	235	1e-55	\| Symbols: NFU2, ATCNFU2 \| NIFU-like protein 2 \| chr5:20315464-20317228 FORWARD LENGTH=235