barSeed - Barley Seed Development Database

Probe CUST_6345_PI390587928

Source Contig U35_3876

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6345_PI390587928	Hv_44K_v2	CAAAACTGCTACAACATTGGCCTCTACTGTGCAAACTTATTTGTTGGAGATTGGACACTT	743	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61229.6	2310	2e-24	2230 - 2289	100	60 / 60	plus	ABC08614 ABC10173 ABC10633
MLOC	MLOC_61229.1	2649	2e-24	2538 - 2597	100	60 / 60	plus	ABC08614 ABC10173 ABC10633
MLOC	MLOC_61229.2	2652	2e-24	2541 - 2600	100	60 / 60	plus	ABC08614 ABC10173 ABC10633
MLOC	MLOC_61229.4	2557	2e-24	2475 - 2534	100	60 / 60	plus	ABC08614 ABC10173 ABC10633
MLOC	MLOC_61229.5	2560	2e-24	2478 - 2537	100	60 / 60	plus	ABC08614 ABC10173 ABC10633
JLOC1	JLOC1_40012.2	2385	8e-25	2251 - 2310	100	60 / 60	plus
JLOC1	JLOC1_40012.1	2523	8e-25	2389 - 2448	100	60 / 60	plus
Harvest21	ABC10173	839	3e-25	37 - 96	100	60 / 60	minus	ABC10173
Harvest35	U35_3876	839	3e-25	744 - 803	100	60 / 60	plus

Contig Sequence (839 bp)

>U35_3876 839 Hv_44K_v2
GGGAATCAAGTAGCAATATATGAAGCCAATCCTCAGGACATTTCACCAAGTATTACCATG
CAATATGGCATGAGTTCATTGATCCCTGAAGGCCAGTTCAATGGCTCTTCCATCCAAACT
CAAGCATCAAGAAGCTCCAACATGCTAGCATTTGGACCTCCACCACAGCAGCCGCATAAC
TTCGAATTCTCAGCATTTGGTCTGTCCATGCAATCCCCAGCTCCTAATCCTTTTGATGAC
TGGCCTGGACGGTTGCAGGAGAACCGCGGTGGTGTTGATGACTGTCTGATGGAGGAGATA
AGAGGGAGAAGCCATGACATGCTGGAGAATGAAGAAGAGATGCAACATATGCTGCGCATT
CTTAGCGGCGGGGCAGCAGCAAACATGAATAATGTAGGTGGCTTTCCCTCCTACCCTTCT
CCTGTACCGGACTTCAACTTCGTGGATGATCGTGCTCCCTCATCCGGTAAGGCTGTTGTT
GGGTGGCTTAAGATTAAGGCTGCCATGCGGTGGGGCATCTTCGTCAGGAAGAAAGCAGCT
GAGAGAAGAGCTCAGCTTGTTGAGCTGGATGACTAGGGGATACGGATGTTGGTAAGACAC
TTGTTTTTCTCGTCTTGTATAATTGCTTTGTTGACGCAATTATAGTCAGGATCTCAAGCT
CCAAAAGTATGAATGGACTCACGTTGGTTGTATAGGTAGCTGTTTGATGGTCATTATCTA
AGTTTTGTTGGTGTTCAGAAAAACAAAACTGCTACAACATTGGCCTCTACTGTGCAAACT
TATTTGTTGGAGATTGGACACTTGAAACAGGCTTTTTTTATGGAAAAAAAAAAAAAAAA

Homology of Contig U35_3876 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g36660.1	653	1e-77	protein\|calmodulin binding protein, putative, expressed
Brachypodium v1_2	Bradi3g46060.2	650	5e-68
Arabidopsis v10	None