barSeed - Barley Seed Development Database

Probe CUST_6311_PI390587928

Source Contig U35_21416

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6311_PI390587928	Hv_44K_v2	AGTTTAGGGGTGCATTTTCCGTGCTTCTATTTTTGTCGAATGATGCGGCATCGCTGAATA	1088	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.856	2.030	1.035	0.845	0.511	0.923
Raw	612.778	659.385	306.898	370.102	84.593	165.226

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368045	2750	2e-24	2673 - 2732	100	60 / 60	plus	ABC15529
MLOC	MLOC_53895.1	1233	2e-24	112 - 171	100	60 / 60	minus	ABC15529
MLOC	MLOC_53895.2	1396	9e-22	1 - 55	100	55 / 55	minus	ABC15529
JLOC1	JLOC1_34654.1	1377	8e-25	1309 - 1368	100	60 / 60	plus
Harvest21	ABC15529	1160	3e-25	1101 - 1160	100	60 / 60	plus	ABC15529
Harvest35	U35_21416	1148	3e-25	1089 - 1148	100	60 / 60	plus

Contig Sequence (1148 bp)

>U35_21416 1148 Hv_44K_v2
GATTGATGCTAATAGAGCTTTATTGAAGTACCGATTACCTTTGAGGGAGATCATTGTGGA
CTTCTACAATGAGTTGAAAAGCATAACATCTGGCTATGCTACTTTTGACTATGAAGATTC
TGAGTATCAAAAATCTGATCTTGTTAAGATGGATATTCTACTTAACGGCCAGCCTGTTGA
TGCTATGGCCACTATAATCCATAACCAAAAAGCTCAGAAGGTTGGAAGAGAATTAGTGGA
TAAGCTCAAGAAATTTATAGAAAGGCAAATGTTTGAGATCACTATACAAGCAGCAATTGG
TTCAAAGGTTATTGCAAGGGAAACTCTGTCAGCAATGAGAAAGAACGTTCTGGCCAAGTG
CTATGGTGGTGATATCACCCGCAAAAAGAAGCTGCTAGAGAAGCAGAAGGAAGGGAAGAA
GCGCATGAAACGTGTTGGATCCGTCGATATTCCCCAAGAGGCATTCCACGAGCTACTCAA
GGTCTCCAGTTCAAAGTAAACAGCCGTATTTTAGCATTGTAGCCTCAGTGTACCTGGAAG
GTCTTCATCCTAGTTAAGTGGGTACGTACTGTCGAAGAGTGTACTCTACCATTTTGCGGG
TTGCGCCTTTGCCATTGTTGTGCTGGAGCCAATGGTGAAACATTGGTCCAGAAGTGCTTA
GTTCACCGCGAGAAGTTTCACCTTCGGTGGCGCTTTTTGTTTTAATTGTGTCTAGAACAT
ACACACCCTGGACCCTGGCACAGAAGAACCTTCACCACCACACGCTGACCCCGAGTGAGA
AATGGATAACGTGTGGCATCGCCGGCTGGTTCATTGTTGGTGCGATCACACGCCTGGTGC
CGTGCTTTACTGCACAGTTTTTTTGGAAGCAGACCAGCAAACAATGCTGCTAACAGTTTG
TGTTTATTGAAACTTCTGTGCACGGCAAAACAGTGGCTTAGATCATACTCATACTTTGTT
CTTTTTTATTACGGAGATCGTTCCTATAGCTCTACGTTTTTCTTTTTTACTTTTTGAGGT
TTCCTATAGTTCTCCTTTGTATCTTTCTGGAAATGGAATAATATGGAACAAGTGGGGTTG
CCCTCCCAAGTTTAGGGGTGCATTTTCCGTGCTTCTATTTTTGTCGAATGATGCGGCATC
GCTGAATA

Homology of Contig U35_21416 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g05250.2	664	5e-88	protein\|GTP-binding protein GUF1, putative, expressed
Brachypodium v1_2	Bradi1g51240.1	668	3e-89
Arabidopsis v10	AT5G39900.1	663	1e-72	Small GTP-binding protein \| chr5:15976719-15978925 REVERSE LENGTH=663