- Probe CUST_628_PI390587928
- Source Contig U35_26054
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_628_PI390587928 | Hv_44K_v2 | AGTACAAAAACGTGTGTCGTCCGAATGATGAGTGTGTATGGAAGGCCAATTGTGTTGGAA | 178 | GeneList: darkgreen MasterList: Transcription_factors_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.712 | 3.800 | 6.498 | 3.167 | 0.044 | 0.034 |
| Raw | 135.077 | 1188.693 | 1677.233 | 1287.951 | 4.873 | 3.198 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC22636 | 402 | 3e-25 | 179 - 238 | 100 | 60 / 60 | plus | ABC22636 |
| Harvest35 | U35_26054 | 402 | 3e-25 | 179 - 238 | 100 | 60 / 60 | plus |
Contig Sequence (402 bp)
>U35_26054 402 Hv_44K_v2 GCGAAATTATTTAGTCAGCATAAAATTTATGCTAAGATGAGGTTCACTCTAGCACTACTC GTGACTCTCGCCTTCATCATAGTATTATCAGATGGAAAAACACAACATTGCACAGAAACA ACTATTGGACATTCTGGTGCCTGTTCAGCCAGTTCTTGTGAGAATGGATGCAATCAAAAG TACAAAAACGTGTGTCGTCCGAATGATGAGTGTGTATGGAAGGCCAATTGTGTTGGAATG GCGTGCAAGTGCAGGGTGTGCACATTTGGCTCCCTCCCCATGCAAGGCTCCAAAAAGGGG AACAATGATGCTAACTAGTAGCACATTTAATTTTTTTTGTTATGACAACAGTTGGAATAT TATAATATAATTATTTTTTTTTTCTAAAAAAAAAAAAAAAAA
Homology of Contig U35_26054 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |