barSeed - Barley Seed Development Database

Probe CUST_6275_PI390587928

Source Contig U35_21432

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6275_PI390587928	Hv_44K_v2	CAGAAAAAGCTTCTTCGGCATTCATTCTACCAATTTCAAGCAGATAGAGCTCTCCCTGAT	1218	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355680	3437	3e-22	1684 - 1742	98	59 / 60	plus	ABC15701 ABC18282
MLOC	MLOC_19654.3	1948	3e-22	1791 - 1849	98	59 / 60	minus	ABC18282
MLOC	MLOC_19654.2	3951	3e-22	3794 - 3852	98	59 / 60	minus	ABC10932 ABC18282
JLOC1	JLOC1_13618.1	2611	1e-22	100 - 158	98	59 / 60	plus
Harvest21	ABC14503	1278	3e-25	1219 - 1278	100	60 / 60	plus
Harvest35	U35_21432	1278	3e-25	1219 - 1278	100	60 / 60	plus

Contig Sequence (1278 bp)

>U35_21432 1278 Hv_44K_v2
AGCAGCGGGTCATCTACACGTCCCCCATCAAGGCCCTCAGCAACCAGAAGTACAGGGAGT
TCAAGGAGGAGTTCTCCGATGTAGGCCTCATGACCGGGGATGTCACCATCGAGCCAAACG
CCTCTTGCTTGGTCATGACCACGGAGATTTGGCGCAGCATGCAGTACAAGGGGTCCGAGG
TGATGAGGGAAGTCGCTTGGGTTATCTTCGATGAGGTGCATTACATGCGCGACAGGGAGA
GGGGAGTTGTGTGGGAGGAGAGTATTGTGATGGCGCCCAAAAACTCGCGGTTCGTGTTCC
TCTCGGCAACGGTACCTAATGCCAAGGAGTTTGCTGATTGGGTTGCCAAGGTACATAAGC
AACCTTGTCATATAGTATACACCGACTATCGACCTACACCTCTCCAGCACTATGTATTTC
CTGCTGGAGGTGATGGCTTATACCTGGTCGTTGATGAAAATGGCAAGTTCAGAGAGGACA
GTTTTCAGAAATCTCTGAATGTCCTTGCCCCTGCTAGTGGCAATGACAAGAAGAGGGAAA
ACGGTAAGCGGCAAAAAGGCGTTGTCTCGGCAGGCAAAACTAATGAAGAAAGCGACATAT
TCAAGATGGTGAAAATGATAATTCAGCGTCAATATGACCCTGTGATACTTTTCAGCTTCA
GCAAAAGAGAGTGTGAATTTCTTGCCATGCAGATGGCCAAGATGGACTTGAATGGGGATG
ATGAGAAAGTGAACATTGAAACCATTTTTTGGAGTGCCATGGATTTGCTTTCAGACGATG
ACAAAAAGCTTCCCCAGGTTTCGAATATGCTTCCCTTATTGAAACGCGGCATTGGAGTGC
ATCATTCTGGTCTGTTGCCCATTTTAAAGGAAGTGATTGAGATACTTTTCCAAGAGGGCC
TCATCAAGTGTCTGTTTGCCACAGAGACATTCAGTATTGGATTGAACATGCCTGCAAAGA
CTGTTGTGTTTACCAATGTACGTAAGTTTGACGGAGATCGATTCAGATGGTTGTCAAGTG
GAGAGTACATTCAGATGAGCGGCCGTGCTGGTCGTCGAGGTATTGATCAGCGTGGTGTCT
GCATATTGATGGTAGATGAGAAAATGGAACCCTCAACTGCCAAAATGATGCTGAAAGGAG
GTGCTGATAGTTTGAACAGTGCCTTTCATTTGAGCTACAACATGTTGCTGAATCAACTAC
GCTCTGAGGATGGTGATCCAGAAAAAGCTTCTTCGGCATTCATTCTACCAATTTCAAGCA
GATAGAGCTCTCCCTGAT

Homology of Contig U35_21432 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g18140.1	777	protein\|superkiller viralicidic activity 2-like 2, putative, expressed
Brachypodium v1_2	Bradi1g52230.1	994
Arabidopsis v10	AT1G59760.1	988	RNA helicase, ATP-dependent, SK12/DOB1 protein \| chr1:21984571-21990110 REVERSE LENGTH=988