barSeed - Barley Seed Development Database

Probe CUST_6270_PI390587928

Source Contig U35_21437

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6270_PI390587928	Hv_44K_v2	CTGTAGGATCCCTATCTTTTCTCATAGATGAACATGAAAGAGTCAAATGCCTTCAAAAAA	1052	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.995	2.638	0.963	1.032	0.899	0.572
Raw	24.613	46.369	16.146	29.646	7.727	4.915

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC16050	1123	3e-25	12 - 71	100	60 / 60	minus	ABC16050
Harvest35	U35_21437	1123	3e-25	1053 - 1112	100	60 / 60	plus

Contig Sequence (1123 bp)

>U35_21437 1123 Hv_44K_v2
GTCTTCTTCCTAGCGCCTTACCCGGAGGACGTTGGCTTCGCTTCGTTGCCCCCCAACCCC
AAGCACGCCGGTGGAGCGAGCACCGACGAGGAGGACAGCAGCACCAGCACGGGTGGGGAA
GAGGACAGGAGGGATGCCGTAGGGATTTGGAAGGCATTTTCTATCCCGGGTGTGCTCACC
TTCGCGGTCTGCCTCTTCTTTGCCAAGCTGGTCGCCTACACCTTCTTGTACTGGCTCCCG
TTCTACTTGACCCAAACTGCCATTGGAGGAGAGTACATGTCGGTCACGGATGCTGGTTAT
CTATCAGTTTTGTTCGATGTAGGAGGAATCATTGGTGGAATTCTCGCTGGGTTCATGTCT
GATCAGCTCGATGCTAGGGCCACTACTGCAGCAATGTTTATGTATCTGGCGATTCCAACA
CTTTACGCCTTTCACGCGTATGGCAGTACTTCGAAAGTGACAAACATTGCCCTGATGATG
ATCAGTGGCTTGTTTGTTAATGGACCTTATGCTCTGATAACAACTGCAGTTTCTGCTGAT
TTGGGGACTCACAAATCTCTCAAAGGAGATTCCCGTGCGTTGGCCACTGTCACAGCAATC
ATAGACGGGACAGGATCGCTTGGTGCTGCCTTAGGGCCATTTGTGACAGGCTTCATTTCA
AAAACTGGATGGGATTCAGTGTTCATAATGCTTATACTTTGTGCATTGATTGCTGGAGCG
TGTTTATCAGGTCTTGTGAAATCAGAGATTCTGCAGATTATTCAAAACTGGAGGAATAGA
TCAAGTAACACGCCGTATGGAACTGCAGATACTGGCGCTCAACCACTTTTAGGGGAGAGT
AGTTGAAGGCAAGGCAGTTTTTGGCGCAGGTGGGGTGGGAATGCGGTATACATTTTTGTA
ATGTTGTCATAGTTGGGAAGTGCTTTCAGTATGCTGCTGCCGAAGATGACGTCGAGCAAA
TATGGTTGAGATAGCATATGTTGCCTTCTCTTTGTCACAGAATAGTATATTGTATATACA
CCTCCTGCAACATCTTGTAATGTATCAATGTACTGTAGGATCCCTATCTTTTCTCATAGA
TGAACATGAAAGAGTCAAATGCCTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_21437 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g43620.1	495	2e-127	protein\|transporter, major facilitator family, putative, expressed
Brachypodium v1_2	Bradi3g50397.1	493	7e-149
Arabidopsis v10	AT4G17550.1	544	3e-90	Major facilitator superfamily protein \| chr4:9777938-9779738 REVERSE LENGTH=544