barSeed - Barley Seed Development Database

Probe CUST_6231_PI390587928

Source Contig U35_23507

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6231_PI390587928	Hv_44K_v2	GTGATAGGGATATCACTACACCTGATTTTGTCTTTTATTCAGATCGGTTAATACGTTTGG	841	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372738	1954	2e-24	1040 - 1099	100	60 / 60	plus	ABC15022 ABC16112
MLOC	AK362770	2185	2e-24	1178 - 1237	100	60 / 60	plus	ABC15022 ABC16112
MLOC	MLOC_37443.2	1538	2e-24	917 - 976	100	60 / 60	plus	ABC15022 ABC16112
MLOC	MLOC_37443.3	1860	2e-24	912 - 971	100	60 / 60	plus	ABC15022 ABC16112
MLOC	MLOC_37443.1	1557	2e-24	609 - 668	100	60 / 60	plus	ABC15022 ABC16112
JLOC1	JLOC1_24249.2	1977	8e-25	936 - 995	100	60 / 60	plus
JLOC1	JLOC1_24249.1	1650	8e-25	609 - 668	100	60 / 60	plus
Harvest21	ABC19766	1081	3e-25	842 - 901	100	60 / 60	plus
Harvest35	U35_23507	1081	3e-25	842 - 901	100	60 / 60	plus

Contig Sequence (1081 bp)

>U35_23507 1081 Hv_44K_v2
GCTCCCGAAGTAGAATAATGCTTATTCAGTGCATCAGATTCGAAGGCCTGTCGTGCCAGC
GTAGTCATTTATTAGCTTGGGGGCTGAACAATGAGTGTACATGCACCTAATGATCTGCTG
TTGTTTGGCGCCTCCAGAACCGAACAATGAAGTCCCAATAAAGCTAGTCGCTCACAAATC
TTAGCAAATTGCAATGGGGGGCCGATTTCATTTCCGGGACGTGCCGGACTTTCACAACGG
CTTTTAATTTTGCAGGACTCGTTCTACCGTGGCTTAACTGCTGAGGAATCTGCAAGTGCT
CAGGACTACAATTTCGATCATCCTGATGCATTTGATACGGAGCAACTTCTTGAATGCATG
GGGCAGCTAAAACGTGCGTTGCCTGTAAATGTTCCTATATATGACTTCAAAAATCACCGA
AGGTGCTCAGAAAGGTTCAGAAAGGTCAATGCATCAGACGTCATTATTTTGGAGGGTATT
TTAGTCTTCCATGATCAAAGGGTTCGCAATCTGATGGACATGAAAATTTTTGTGGACACA
GATGCAGATATTAGGCTTGCCCGGCGAATAAGGCGTGATACAGTTGAAAGAGGTAGAGAC
GTTAGCTCGGTGCTTGATCAGTATGGGAGGTTTGTGAAGCCAGCATTTGATGATTTTGTT
CTGCCTTCAAAGAAATATGCTGATGTGATCATACCACGCGGAGGTGATAACCATGTTGCA
ATTGACCTGATCGTTCAACATATTCGTACAAAGCTTGGTATGCATGACTTGTGCAAAGTC
TTCCGAAACGTCTTTGTAGTTCAATCAACTTTCCAGATCCGAGGAATGCATACTCTGATT
CGTGATAGGGATATCACTACACCTGATTTTGTCTTTTATTCAGATCGGTTAATACGTTTG
GTAGTTGAGCATGGTCTGGGGCATTTGCCATTTACAGAAAAGCAGATTCTTACTCCAACA
GGATCTGTTTATACGGGAGTTGATTTCTGCAAGAAGCTCTGCGGAGTGTCTATTGTCCGA
AGTGGTGAAAGTATGGAGAATGCATTGCGTGCTTGCTGTAAAGGAATAAAAATTGGTAAA
A

Homology of Contig U35_23507 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g32820.1	497	3e-173	protein\|uridine/cytidine kinase-like 1, putative, expressed
Brachypodium v1_2	Bradi4g34600.1	492	7e-179
Arabidopsis v10	AT5G40870.1	486	8e-154	\| Symbols: ATUK/UPRT1, UKL1, UK/UPRT1 \| uridine kinase/uracil phosphoribosyltransferase 1 \| chr5:16375021-16378384 FORWARD LENGTH=486