barSeed - Barley Seed Development Database

Probe ABC16112

Source Contig ABC16112

barSeed

Links

Affymetrix Source Sequence (1239 bp)

>ABC16112 1239
GGCGTGACTTGATGGACATGAAAATTTTCGTTGACACAGATGCTGATATTAGGCTTGCCC
GAAGAATAAGGCGTGATACAGTTGAAAGAGGTAGAGATGTTCTCTCAGTGCTTGAGCAGT
ACGGGATGTTTGTGAAGCCTGCCTTTGATGATTTTATCCTGCCTTCCAAGAAGTATGCTG
ATGTGATCATACCGCGAGGAGGAGATAACCATGTTGCCATTGATTTAATTGCGCAACATA
TTCGTACAAAACTTGGACAGCATGACTTGTGCAAATTTTATCGAAATGTTCACGTAGTTA
ACACAACTTTCCAGATACGGGGAATGCATACCCTCATTCGTGACCGGGAAATTACGACTC
CTGATTTTGTCTTCTATTCAGATCGGCTGATTCGTCTGGTAGTTGAACATGGTCTGGGGA
ATTTGCCATTTACAGAGAAGCAGGTCGTTACACCTACAGGATCTATTTATTCAGGAGTTG
ATTTCTGCAAGAAGCTCTGTGGAGTGTCGATTGTTCGAAGTGGTGAAAGCATGGAGAATG
CTTTGCGTGCTTGTTGTAAGGGGATAAAAATAGGTAAAATCCTAATACATCGTGTTGGAG
ACAATGGACAACAACTCATATACCACAAGCTGCCCAATGATATTGAGCATCGTCACGTTC
TACTTATGGATCCTGTGCTCGGTACAGGTAACTCAGCAAGTCAAGCTATACAGCTTCTTA
AAAGTACAGGAGTTCCAGAGGACCACATCATGTTTCTTAACCTTATCTCGGCTCCTGAAG
GAATCCATTGTGTCTGCAAGCAATTCCCTGGTCTGAAGATCATAACATCGGAAATCGACG
CCGGGTTGAACGAGGACTTCCGTGTCGTGCCAGGGTTGGGTGAATACGGCGATCGCTACT
TCGGCACTGACTAATCGGCTAAGATGCCGCTTTCATTGGCGGCGAAGCGATAGACGGGGT
AGAACTAACAGGAGATATACTGGTGTTTGGTTGTTTGTTGTATACCAGCAGAGTGGAGCG
GAGGCATCACTCTGGCAACCATTGGAGGTACCAATGTCACATGATGACATGCATTATTAT
CATAATTCATATGGCTAAGCTAGACACTTAGCTCTTTATGTTCATGTGACGAGCTTTGAC
TTTTTGCGAGTTTTGAGGCCCTTGCTTGATAACCTGCTCCTCGGCTGTTATAATGGCCTG
TGAAATGTAATACCTTGCCTGGAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_37996.6	1451	0.0	363 - 1451	100	1089 / 1089	None	ABC16112
AK361661	1676	0.0	590 - 1674	100	1085 / 1085	None	ABC16112
MLOC_37996.2	1433	0.0	392 - 1433	100	1042 / 1042	None	ABC16112
MLOC_37996.5	1397	2e-56	363 - 482	100	120 / 120	None	ABC16112
MLOC_37996.3	1311	2e-56	386 - 505	100	120 / 120	None	ABC16112
MLOC_37996.1	1426	3e-160	1120 - 1426	100	307 / 307	None	ABC16112
AK356415	1800	2e-56	661 - 780	100	120 / 120	None	ABC16112
AK362770	2185	0.0	848 - 1749	83	746 / 904	CUST_34032_PI390587928 CUST_6231_PI390587928	ABC15022 ABC16112
MLOC_37443.3	1860	0.0	582 - 1483	83	746 / 904	CUST_6231_PI390587928	ABC15022 ABC16112
MLOC_37443.1	1557	0.0	279 - 1180	83	746 / 904	CUST_6231_PI390587928	ABC15022 ABC16112
AK372738	1954	0.0	710 - 1611	82	745 / 904	CUST_6231_PI390587928	ABC15022 ABC16112
MLOC_37443.2	1538	4e-109	587 - 978	85	333 / 392	CUST_6231_PI390587928	ABC15022 ABC16112
MLOC_37996.4	892	3e-55	403 - 520	100	118 / 118	None	ABC16112