barSeed - Barley Seed Development Database

Probe CUST_6228_PI390587928

Source Contig U35_11531

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6228_PI390587928	Hv_44K_v2	GAGATGGTTTGTGCATTCAACTTGTCCATACATATCTTCTATGTTTTCGAGATTTGTTTG	299	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2822.4	2119	2e-24	458 - 517	100	60 / 60	plus	ABC14396 ABC29265
MLOC	MLOC_2822.6	2371	2e-24	407 - 466	100	60 / 60	plus	ABC14396 ABC29265
MLOC	MLOC_2822.2	2946	2e-24	527 - 586	100	60 / 60	plus	ABC14396 ABC29265
MLOC	MLOC_2822.5	2374	2e-24	522 - 581	100	60 / 60	plus	ABC14396 ABC29265
JLOC1	JLOC1_1683.3	2596	8e-25	460 - 519	100	60 / 60	plus
JLOC1	JLOC1_1683.2	2676	8e-25	527 - 586	100	60 / 60	plus
Harvest35	U35_11531	383	3e-25	300 - 359	100	60 / 60	plus

Contig Sequence (383 bp)

>U35_11531 383 Hv_44K_v2
CTTTGCTTCGCTATTTCTCTTCTCCACTGAGCATCTTGATTGGGGCGTTAGACGATGATG
ATCTTTTCAACTTACCATCAAACTCTGAATCGATACTATGTCGATTACACCAAGTTTTCG
TGAGTCTAATGCGTTCTCATGTATTCGTTTTGTTGTCCTTTTTTTGGTTTCTAGATCCGA
TTTACATCCTTTGAAGGCAATACATTAGAGTCTCTGGTGCGCTTCTTAATAGCGTAATTC
AGCGCTGTACGTTGCCAATATGAATCTTTGGGCTAAGATTCTGGCACAGACCATTCTTCG
AGATGGTTTGTGCATTCAACTTGTCCATACATATCTTCTATGTTTTCGAGATTTGTTTGT
GTCTTTTTTTGGTGATTTTGTTC

Homology of Contig U35_11531 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None