barSeed - Barley Seed Development Database

Probe ABC14396

Source Contig ABC14396

barSeed

Links

Affymetrix Source Sequence (1169 bp)

>ABC14396 1169
GGTGCGTGATTTGAAACGGGTCTCTGAGGGGCTTCAGAAATGATGTCTGTTTTCTAGCAA
CATTTTGTTTGCCCTGTTTTCTTGGGCCCGATGCCACGTCTCAGGTAGCCACAAGCCTTG
ACCAGAGATGCTACATTGTGCCAACAAAGATTTTCACATTTGATAGGAACCTGTGGCTGT
CATACAGTCGGTACACAGAGCCGTTTTTTGTGATTACACTTCTTTATTAATTGTGTACTC
AGGTTGTACTAGATTATAGGGAAATCAATGGCGATGATGATAGAACTAAGGCTTGTTTCT
CAAAACATTCGCAGATGCCGCCTAAGAGCTTTCGCCCTGCCAGGCTTGAGAGCTAATGCT
GCTAATTCCTTCCTTGGATGTCTGAGCCATAATGATTTCCACAATTTAATATTGCTTTTG
TTTTCTCTGATCTTTCTTGCCTTTCAGGTTTTTCATTCTCGAAGTGGAATGTATGTTGCT
ATAGACTTGTAGACTTCATTCAAGCTGCTTTGTAGAATGCAATACTTGTTGAAACTGAAA
GGAGTAGGTTGCTATCGGTTGAAACAGTGTCTTAAATTGTTAGACCTTCAGAATGTTAAT
ATCATAACTAACCTTATGATCTGGATGTCGTTCTATTCTATGACATAACTTGTAACATTT
GTTTCAAGCTTGACATCACATAACAGTATTTTTCTTATGGAAGTTTTTGTTATATTTTCA
CATCTGTCAAAATGTTCCTCCAAAAACAGTGTGGCAAATGGTGTAGTATTTGTATGTGAA
AGACTGAAATCTTTGACATGTTTATGATTCATGAAACTCTGCTTGTTATGTGATGTCACC
CATTAGTAAGCATGTCACTCTTGTTGTTGTTGTCTTACTTTACTATGAAAAAATATGCTG
AATGTCTGGTTTAACCTGTACCACTTTGATCAAACATGAAGCTGCTGATCACGATGAGGC
ATGGATATCAGAACTATGAAATTGGTATGGTAGATCAAGTCTACTGGAATTCTTTGATGT
ATGTTTTGTTAGGCCTTTTTAACACTTGGATCGACTTGGCAGCCTACGCTGAGCCAACGC
ACGGGGAAATGTTGTATTTGGTACCTGTTGTGAACAATACTGCATACCGAACTGTCTCTT
GCGCTTCCCTCGAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_20655.1	2929	1e-53	865 - 991	97	124 / 128	None	ABC14396
MLOC_69524.1	1955	2e-97	621 - 1040	83	356 / 430	None	ABC14396
AK373724	2194	7e-96	930 - 1349	83	355 / 430	None	ABC14396 ABC38258
MLOC_2822.4	2119	2e-76	1402 - 1761	83	298 / 360	CUST_6228_PI390587928	ABC14396 ABC29265
MLOC_2822.6	2371	2e-76	1351 - 1710	83	298 / 360	CUST_6228_PI390587928	ABC14396 ABC29265
MLOC_2822.2	2946	2e-76	1471 - 1830	83	298 / 360	CUST_6228_PI390587928	ABC14396 ABC29265
MLOC_2822.5	2374	2e-76	1466 - 1825	83	298 / 360	CUST_6228_PI390587928	ABC14396 ABC29265
MLOC_36728.1	3463	1e-58	2015 - 2174	93	148 / 160	None	ABC14396
MLOC_2605.1	1321	2e-57	1082 - 1240	93	148 / 160	None	ABC14396
MLOC_3231.1	922	6e-57	382 - 541	92	148 / 161	None	ABC14396
MLOC_63162.1	1825	1e-54	1072 - 1204	96	128 / 133	None	ABC14396
MLOC_16988.1	2448	1e-54	1057 - 1225	90	153 / 170	CUST_35788_PI390587928	ABC14396
MLOC_16988.2	2097	1e-54	610 - 778	90	153 / 170	CUST_35788_PI390587928	ABC14396
MLOC_33300.1	786	4e-54	457 - 596	94	132 / 140	None	ABC14396