barSeed - Barley Seed Development Database

Probe CUST_6211_PI390587928

Source Contig U35_11540

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6211_PI390587928	Hv_44K_v2	CCTAGTACAGCTTGACATACAAGGTAATATTTTTGGCGGTTATCAATACTCAAAGGATAT	544	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363598	1931	2e-24	394 - 453	100	60 / 60	minus	ABC30828
MLOC	AK361585	3369	2e-24	567 - 626	100	60 / 60	plus	ABC25331
MLOC	MLOC_57961.1	3339	2e-24	2642 - 2701	100	60 / 60	minus	ABC25331
JLOC1	JLOC1_37630.1	3073	8e-25	2658 - 2717	100	60 / 60	minus
Harvest21	ABC24384	608	3e-25	545 - 604	100	60 / 60	plus
Harvest35	U35_11540	608	3e-25	545 - 604	100	60 / 60	plus

Contig Sequence (608 bp)

>U35_11540 608 Hv_44K_v2
GCACCATGCCTCCGTTCCGGGTCGAAATGGCTGCAGCAAGCTTCCTTTTGCTAACCATCA
TCCTAGCCAGCACCACCAGCGCCACCTCCTCCTCCGTCGCCATCAAGGCGAGCCGAACAT
CCAACGGGGGCTGCATCCCGGCCGAGAGGGCCGCGCTGCTCTCCTTCAAGGCCGGCATCA
CAGGCGACCCGGACAATCGTCTCGCTTCATGGCAGCAGGGTGCGCATGACTGCTGCCGGT
GGAGTGGCGTCACCTGCAGCCATCGGACAGGCCACGTCGTCAAGCTCGACCTCCACCAAG
ATATTCCAATGGTGTATTACTTATCTGATGATGACCCTGAGAACCACTCACTGCGTGGTC
AGTTATCTCCTTCTTTGCTTGCTCTCACACGCCTCAAATATCTCGACCTTAGCCAGAACT
ATCTCCTCGGAGATGCAAAGGCTATGCCGGGGTTCTTGGGCTCTATCAAGAGTTTGACTT
ATCTCAACCTCTCCAATACGGATTTTCATGGTCTAGTGCCTCCTCAGTTAGGCAACCTCT
CCAACCTAGTACAGCTTGACATACAAGGTAATATTTTTGGCGGTTATCAATACTCAAAGG
ATATATCT

Homology of Contig U35_11540 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None