barSeed - Barley Seed Development Database

Probe CUST_6145_PI390587928

Source Contig U35_35520

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6145_PI390587928	Hv_44K_v2	TTGATATGGCGGATGCACGCATATCACCTGCTAAATTGTGTCAAATTCTGGAACAACGCA	421	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6226.4	1491	2e-24	1150 - 1209	100	60 / 60	plus	ABC12316 ABC16415
MLOC	MLOC_6226.2	1645	2e-24	528 - 587	100	60 / 60	minus	ABC12316 ABC16415
MLOC	MLOC_6226.1	612	2e-24	528 - 587	100	60 / 60	minus	None
MLOC	MLOC_6226.3	1528	2e-24	360 - 419	100	60 / 60	minus	ABC12316 ABC16415
JLOC1	JLOC1_4050.1	1622	8e-25	1034 - 1093	100	60 / 60	plus
Harvest35	U35_35520	514	3e-25	422 - 481	100	60 / 60	plus

Contig Sequence (514 bp)

>U35_35520 514 Hv_44K_v2
GGGGAAGTTGTAACAACCCATGGCATCTAGCTTCATATTGACGGAGCTCGTATTTTCAAT
GCCTCGGCGGCACTTGGGGTTCCTGTTGATAGACTTGTGAGGGCTGCTGATTCGGTTTCG
GTAGGCCTAGCAAAAGGGATAGGTGCTCCTATTGGATCAGTTATTGTCGGTTCCAAGGCC
TTCATACACAAGGTGATGATGGACACAATTTCTGCTAGAACAGCTACAATTCTTAGGAAG
ACACTAGGTGGTGGCATAAGGCAGGTAGGAATTCTTTGTGCTGCGGCCGAAGTTGCAGTC
CGCGACACCGTGGGCAAGCTTGCGGACGACCATAGGAAGGCTAAAGTCTTAGCAGATGGA
CTGAAGAAAATTGAACGTTTTACAGTTGATTTACCTTCAGTGGAGACCAATTTGGTATTC
TTTGATATGGCGGATGCACGCATATCACCTGCTAAATTGTGTCAAATTCTGGAACAACGC
AATGTGCTTGCAACGCCAATAGGCTCCAAGAGTG

Homology of Contig U35_35520 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g43650.2	373	3e-79	protein\|L-allo-threonine aldolase, putative, expressed
Brachypodium v1_2	Bradi5g15710.1	373	2e-80
Arabidopsis v10	AT3G04520.1	355	3e-55	\| Symbols: THA2 \| threonine aldolase 2 \| chr3:1217397-1219571 REVERSE LENGTH=355