barSeed - Barley Seed Development Database

Probe CUST_613_PI390587928

Source Contig U35_14081

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_613_PI390587928	Hv_44K_v2	CATTGAGAGGCCAACCTACACCAACTTGAACAGGCTGATATCACAGATCATATCTTCTCT	838	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11751.1	1952	2e-24	955 - 1014	100	60 / 60	minus	ABC00127 ABC00411 ABC00930 ABC50944
JLOC1	JLOC1_7825.1	2084	8e-25	1018 - 1077	100	60 / 60	plus
Harvest21	ABC00411	1860	3e-25	832 - 891	100	60 / 60	plus	ABC00411
Harvest35	U35_14081	1843	3e-25	839 - 898	100	60 / 60	plus

Contig Sequence (1843 bp)

>U35_14081 1843 Hv_44K_v2
ATGCGCCCGCAAACTGCCCGATCTCCTCCACTTCTCCCCTCCTCTCTCATCGCCCCCTTT
TATCTCCCGATCTCACACATTTTGGGAAGGGAGAGAGAAGCAGAGGAGGCCATTCTTTAC
ACCCAAGAAAGCCCGGAAGAGAAGGCGAGGGGCGAGGAGGAGGAGGAGGAGGAGGAGGAG
ACGAGATGAGGGAGATCATCAGCATCCACATCGGCCAGGCCGGGATCCAGGTCGGCAACG
CTTGCTGGGAGCTCTACTGCCTCGAGCACGGCATCAATCAGGATGGCACCATGCCCAGTG
ACACCACGGTTGGGGTTGCACACGATGCGTTCAACACGTTCTTCAGTGAGACCGGTGCGG
GCAAGCACGTGCCGAGGGCCATCTTCGTCGACCTTGAGCCCACTGTCATCGATGAGGTGC
GCACCGGTGCCTACCGCCAGCTCTTCCACCCGGAGCAGCTCATCTCTGGGAAGGAGGATG
CCGCCAACAACTTCGCCCGTGGCCACTACACTGTTGGAAAGGAGATCGTAGATCTATGTC
TGGATCGTGTACGCAAATTGGCAGACAATTGCACCGGGCTGCAGGGATTCTTGGTGTTCA
ATGCTGTCGGTGGTGGAACTGGATCAGGACTGGGTTCTCTGTTGTTGGAGCGCCTCTCGG
TTGATTATGGCAAGAAATCTAAGCTTGGATTCACCATTTACCCTTCCCCACAGGTCTCAA
CAGCTGTTGTAGAACCATACAACAGTGTCCTCTCCACTCACTCTTTGCTTGAGCACACCG
ACGTTGCGGTCCTCCTAGATAACGAGGCTATCTATGACATATGCCGGAGGTCTCTTGACA
TTGAGAGGCCAACCTACACCAACTTGAACAGGCTGATATCACAGATCATATCTTCTCTTA
CCACCTCCCTGAGGTTTGATGGTGCCATCAATGTGGATGTCACAGAGTTCCAGACCAACC
TTGTCCCTTACCCACGTATCCATTTCATGCTTTCGTCGTATGCCCCTGTTATCTCTGCCG
AGAAGGCTTACCATGAGCAGCTCTCTGTGCCTGAAATCACCAATGCTGTCTTTGAGCCCT
CAAGCATGATGGCCAAGTGTGACCCTAGGCATGGAAAATATATGGCCTGCTGCTTGATGT
ACCGTGGTGATGTTGTTCCCAAGGATGTCAATGCCGCGGTAGCAACCATCAAAACCAAGA
GAACTGTCCAGTTCGTCGACTGGTGCCCTACCGGGTTCAAGTGTGGCATCAACTACCAGC
CACCTTCCGTCGTCCCCGGAGGTGACCTGGCAAAGGTTCAGCGCGCCGTGTGCATGATCA
GCAACAACACCGCTGTCGCCGAAGTGTTCTCGCGCATCGACCACAAGTTCGACTTGATGT
ACGCCAAGCGTGCGTTCGTGCACTGGTACGTCGGCGAGGGAATGGAGGAAGGTGAGTTCT
CGGAGGCTCGTGAGGACTTGGCCGCCCTCGAGAAGGACTACGAGGAAGTTGGCGCCGAAG
GCGCGGACGACGAGGGCGACGAGGGCGATGACTACTAAGTAGCTGGTTAATAAGGTAGTT
GGCTGGTTAATGATTGGCTTTGATCTGTATACTCGGTAATTTGGTTCCGTTGCGTTACAT
ATTGATTGCTGTTATGCGTGTTTCCTTTCCTGTAATGTACTGAAGATGTTGTTAGGGTGG
CCATGATTGTTGATACCCCATTTCCACATTTTGGCTTTCGATGCTACTCGTCCCGAGTTT
GGTGTGCATGCGCCATTCTGAGCCGATCTGCAAATATTTGTATGCTCTCTAATGTACTGT
GCCATGTTAGTACCACGGAGGTTTCTGTTTAAAAAAAAAAAAA

Homology of Contig U35_14081 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g38730.1	451	protein\|tubulin/FtsZ domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g23770.1	451
Arabidopsis v10	AT5G19780.1	450	\| Symbols: TUA5 \| tubulin alpha-5 \| chr5:6687212-6688926 FORWARD LENGTH=450