barSeed - Barley Seed Development Database

Probe CUST_612_PI390587928

Source Contig U35_14082

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_612_PI390587928	Hv_44K_v2	TATGCTCTGACGGTTCAGTGCCACATAATAATGAACGAAGAGTTTTTGTACTGTAAAAAA	1642	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.041	0.066	0.479	1.929	1.727	2.229
Raw	72.029	182.480	1228.990	7600.347	2374.440	3314.553

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357138	1787	7e-23	1598 - 1657	98	59 / 60	plus	ABC00169 ABC00411 ABC00902 ABC00930
JLOC1	JLOC1_39306.1	1916	4e-23	1757 - 1816	98	59 / 60	plus
Harvest21	ABC00930	1656	1e-23	1584 - 1644	98	60 / 61	plus	ABC00930
Harvest35	U35_14082	1715	3e-25	1643 - 1702	100	60 / 60	plus
Harvest35	U35_37642	624	1e-23	122 - 181	98	59 / 60	minus

Contig Sequence (1715 bp)

>U35_14082 1715 Hv_44K_v2
GTGCAGCTTCCCTTCTTCTCTCCTCCAACCTTTTCCCCCTGTTCTGCAAAAGCCCTTTCC
GTTCCCTTCTGGCTGCTTCCTCCTGCAGGTGCTACTTCTGAGCTTCCGAGGCGACACAGC
TGCAGAAGAGCAGAGCAAACAGAGCTGGTCAGAGAGAGATGAGGGAGATCATCAGCATCC
ACATAGGGCAGGCGGGCATCCAGGTGGGGAATTCCTGCTGGGAGCTCTACTGTCTCGAGC
ATGGCATCCAGCCCGACGGCCTCATGCCCAGTGATACCTCGGTTGGGGTTGCAAAGGATG
CATTCAACACCTTCTTCAGTGAAACGGGTTCAGGGAAGCACGTTCCGAGGGCCTTGTTCG
TCGATCTGGAGCCCACGGTCATCGACGAGGTGAGGACGGGGGCATACCGCCAGCTCTTCC
ACCCCGAGCAGCTCATCTCCCACAATGAAGATGCTGCTAACAACTTTGCCCGTGGACATT
ACACAGTTGGAAGAGAGGTAGTGGACCTTTGCCTTGACCGGATCAGAAAATTGGCTGACA
ACTGCACTGGCCTCCAAGGTTTCTTGGTTTTCAATGCTGTCGGTGGCGGAACTGGCTCAG
GACTTGGCTCATTGCTTCTGGAGCGCCTATCGGTCGACTATGGCAGGAAATCCAAGCTCG
GTTTCACTATCTATCCTTCACCACAGATTTCGACGGCCGTCGTCGAGCCTTACAACAGCG
TGCTCTCTACCCACTCGCTGATCGAGCACACCGACGTGGTGGTTCTCCTGGACAACGAGG
CCATCTACGACATCTGCAAGAGGTCCCTGGACATCGAGCGCCCGACCTACACCAACCTGA
ACAGGCTGATATCCCAGGTGATATCGTCCCTGACCACCTCCCTGCGGTTCGACGGCGCCA
TCAACGTGGACATCACCGAGTTCCAGACCAACCTGGTGCCGTACCCGAGGATCCACTTCA
TGCTCTCCTCCTACGCGCCCATCATCTCCGCGGAGAAGGCCTTCCACGAGCAGCACTCTG
TCCCCGAGATCACCAACACCGTGTTCGAGCCGTCGAGCGTCATGGCCAAGTGCGACCCCC
GGCACGGCAAGTACATGGCGTGCTGCCTCATGTACCGCGGCGACGTCGTGCCCAAGGACG
TCAACTCCGCCGTCCACTCCATCAAGACCAAGAGGACCGTGCAGTTCGTCGACTGGTGCC
CGACTGGGTTCAAGTGCGGGATAAACTACCAGCCGCCGACGGTGGTTCCGGGAGGGGACC
TGGCCAAGGTGCGGCGGGCGGTGTGCATGATCAGCAACAACACGGCGGTGGCCGAGGTCT
TCTCGCGCATCGACCGCAAGTTCGACCTCATGTACGCCAAGCGCGCGTTCGTGCACTGGT
ACGTCGGGGAAGGGATGGAGGAGGGGGAGTTCTCGGAGGCCAGGGAGGACCTGGCCGCGC
TGGAGAAGGACTACGAGGAGGTCGGAGCTGAGGGTGAAGACGACGACGACGAAGTTGATG
AGTACTGAGTTGATCGGTCGTGCTTAATTTGGGTGGCAGTGTTGTGCACTTCTATGCCGT
TCCTTCTTCTCTGTCCCTGTTTTGCTGTTGCATCTGTGATGTTCGGTGGTTAGCAGAGTA
AAAAACTTGTCAGATTGATTCGTATGCTCTGACGGTTCAGTGCCACATAATAATGAACGA
AGAGTTTTTGTACTGTAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14082 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g11970.1	450	protein\|tubulin/FtsZ domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g69670.1	450
Arabidopsis v10	AT5G19780.1	450	\| Symbols: TUA5 \| tubulin alpha-5 \| chr5:6687212-6688926 FORWARD LENGTH=450