barSeed - Barley Seed Development Database

Probe CUST_6092_PI390587928

Source Contig U35_10118

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6092_PI390587928	Hv_44K_v2	CGGCAAGCTGGACGAGGGGCAGAGGTGACCACGCGGCGAGGTGAAGGAGGCGAAGACTCG	223	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358998	1487	2e-24	1083 - 1142	100	60 / 60	minus	ABC18393 ABC34568
Harvest21	ABC22531	445	1e-23	224 - 283	98	59 / 60	plus
Harvest35	U35_10118	523	3e-25	224 - 283	100	60 / 60	plus

Contig Sequence (523 bp)

>U35_10118 523 Hv_44K_v2
CAGCCCAATCCCTACTCGCTCGCCGAGATCCAAGACGGATGCGGCGACTCGGAGCGGACG
CATGCGGAAGGAGGAGTTCGGCGAGCAGGAGCTGGTGGTGGCCGCCGTTCTCGCGGACCT
GCTGTCACCGTCAGGGAGGGATCTGGCGGGCTTGTGCGGGGGCTTGCTCCGGCGGCGGCC
TTATCCACACGCGCCCGCGGCCGGCAGCTCAGCTCTCTCCGTGCGGCAAGCTGGACGAGG
GGCAGAGGTGACCACGCGGCGAGGTGAAGGAGGCGAAGACTCGGAGCAAGCCCAGGTCCC
GCCGCCGCCGCGTGCTGCTCTTCCCGCTCCCGTACCAGGGCCACATCAATCCCATGTTCC
AGCTCGCGGGCCTCCTCCACGCGCGCGGCTTCGCCGTCACCGTCTTCCACGCCCGCTTCA
ACGCGCCCGACCTGTCCCGCCACCCGGCCTACGGCTTCGTCCCCGTCCCCGACGGCTTGC
CCGCGGGCACCCCGGAGACGGTGGCGGGCACCATGGAGCACAT

Homology of Contig U35_10118 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None