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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_6079_PI390587928Hv_44K_v2CTGAAGGACATTCTTGGTGACAATCCTCCTGCATTAAATAACAACAGTACTACTTCAAAT601GeneList: skyblue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.6320.7511.3691.3791.0211.161
Raw 87.998149.266261.260385.218105.452134.543



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK37647623892e-24626 - 68510060 / 60plus ABC20642 ABC40816
MLOCMLOC_38865.16532e-24512 - 57110060 / 60plus None
MLOCMLOC_38865.38112e-24557 - 61610060 / 60plus None
MLOCMLOC_38865.28052e-24534 - 59310060 / 60plus None
JLOC1JLOC1_25310.110598e-25509 - 56810060 / 60plus
Harvest21ABC157206643e-25602 - 66110060 / 60plus
Harvest35U35_221026643e-25602 - 66110060 / 60plus



Contig Sequence (664 bp)

>U35_22102 664 Hv_44K_v2
AGAAACCCTCCTCCCTCGCCTTCCCAGGGCCCCCTTCCCCTCCCCCTCCCCCTCCCCGCT
CCGCCCTCTCCTCTTCGGCCCGCAAATTCAAGCTCGGGAGCTCGCAACCGTGGGAGTGCA
TATTTCTCTAGGGTTTAAGCGGGTCCGCGAAGGAGCGGAGTTAGGTGGAGCCTTCCTGAT
GGCGGCCACGAAGGCAGATGCAAAGGCCGAACCAACTGGCGGCGGCGGCGGCGGCGGCTC
CTTCACCGAGGAGAGGCTCTCCGAGAAGCTCAATAAGCTCAGCAGCTCAGCGGCGAGCAT
CCAGACACTTTCTAATTGGTGCATATTTCATCGAAAGAGAGCCAGAAGGGTTGTCGATAC
ATGGCAGAGGCAGTTTAATAATGCAACAACCGATAAGAAAGTATCATTCCTGTATCTGTC
AAATGACATCCTGCAAAACAGCAAACGCAAGGGAGGAGAATTTGTGAATGAGTTCTGGAG
GGTTCTTCCTGGGTTACTGAAAGATTTCTATGAAAATGGGGGACAAGATGGAAAGAAAGT
AGTGGCAAGATTAATAGGGATTTGGGACGAGCGGAAGGTTTTTGGAACTCGGAGCGAAAG
TCTGAAGGACATTCTTGGTGACAATCCTCCTGCATTAAATAACAACAGTACTACTTCAAA
TCCT



Homology of Contig U35_22102 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os11g03570.15884e-74protein|protein of unknown function, DUF618 domain containing protein, expressed
Brachypodium v1_2Bradi4g43827.16311e-85
Arabidopsis v10None