barSeed - Barley Seed Development Database

Probe CUST_6046_PI390587928

Source Contig U35_10149

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6046_PI390587928	Hv_44K_v2	AAGATCATATTTGGTGCTCATGCACCTGATGTTCTGAGAATGCTAGGGGGTGAAGCAACA	657	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.136	0.670	0.931	0.524	1.099	1.659
Raw	8.081	4.885	8.743	6.124	4.415	9.750

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65493.1	2095	2e-24	1129 - 1188	100	60 / 60	plus	ABC12308
MLOC	MLOC_65493.3	1970	2e-24	1036 - 1095	100	60 / 60	plus	ABC12308
MLOC	MLOC_65493.2	1923	2e-24	1038 - 1097	100	60 / 60	plus	ABC12308
MLOC	MLOC_65493.4	1930	2e-24	994 - 1053	100	60 / 60	plus	ABC12308
MLOC	AK360038	3048	3e-21	913 - 972	97	58 / 60	plus	ABC12308 ABC50457
JLOC1	JLOC1_43103.2	1580	8e-25	695 - 754	100	60 / 60	plus
JLOC1	JLOC1_43103.1	1917	8e-25	1032 - 1091	100	60 / 60	plus
Harvest21	ABC19169	608	3e-25	385 - 444	100	60 / 60	plus
Harvest35	U35_10149	881	3e-25	658 - 717	100	60 / 60	plus

Contig Sequence (881 bp)

>U35_10149 881 Hv_44K_v2
CCACCACCACCTCGNNACCTCGGCTTCATGGGTCTTCAACCGGGTGACATATCCAACATG
CTGGAATGGTTTGAAGAACTTGGCGTGGAGATGGAGATATCCGACATGTCGCTCTCGGTG
AGCACGCAGCTCTCCGGGGGCGGCAGGTGCGAGTGGGGCAGCCGGAACGGCCTCTCAGGC
CTCCTGGCACAGAAGAGCAATGCCGTCCGCCCCGCCTTCTGGCACATGATCCGTGAGATC
CTCAAGTTCAAGGAGGATGCTCTCAAGTACTTGGAGGATCATGAGAGCAACCCTGACCTG
GACCGGCACGAGACTCTCGGGCAGTTCATCAAGACCCATGGGTACTCCCAGCTCTTCCAG
GAGGCTTACCTGATCCCAATCTGTGCAAGCATATGGTCATGCCCGTCACAGGGTGTGGTC
GGCTTCTCAGCTTTCTTCGTCCTCTCTTTCTGCCGCAACCATCACCTCCTTCAGATCTTC
GGTCGGCCCCAGTGGCTCACCGTCAAAGGGCGTTCGCATACATATGTAAACAAGGTAAGG
GAGGAACTGGAGAGCATGGGTTGTCAGATTAAGACTAGCTGCCAAGTCAAATCAGTTTCA
AGCTTCGACGGAGGATACAAAGTCTTGGAGGTCGGTGGCTCGGAGGAGGTGTACGACAAG
ATCATATTTGGTGCTCATGCACCTGATGTTCTGAGAATGCTAGGGGGTGAAGCAACACAC
GAGGAGTTGAGAATTCTGGGTGCGTTCCAGTATGTCCACAGTGACATATACCTCCATCGC
GACGACACTTTGATGCCACAGAACCCGTCCGCATGGAGCGCCTGGAATTTTCTGGGGACA
ACAAGCAGCGGCGTCTCTGTTACCTATTGGCTAAATCTGCT

Homology of Contig U35_10149 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g16650.1	838	3e-120	protein\|Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed
Brachypodium v1_2	Bradi5g02490.1	795	4e-169
Arabidopsis v10	AT3G23510.1	867	1e-129	Cyclopropane-fatty-acyl-phospholipid synthase \| chr3:8428071-8433159 FORWARD LENGTH=867