barSeed - Barley Seed Development Database

Probe CUST_5994_PI390587928

Source Contig U35_18725

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5994_PI390587928	Hv_44K_v2	GCGGTGCAATAGCTTGCGTCCATTCCTTGTTATATATATGCAATAGTTCCGCGCCATAAA	748	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11854.1	2095	2e-23	75 - 132	100	58 / 58	minus	ABC09897 ABC09898
MLOC	MLOC_11854.2	2016	2e-23	75 - 132	100	58 / 58	minus	ABC09897 ABC09898
MLOC	AK361152	3385	7e-23	1843 - 1902	98	59 / 60	plus	ABC02209 ABC02210 ABC02211 ABC02212 ABC02214 ABC09897 ABC09898 ABC26571
JLOC1	JLOC1_7901.1	2107	1e-23	1841 - 1898	100	58 / 58	plus
Harvest21	ABC09897	822	3e-25	749 - 808	100	60 / 60	plus	ABC09897
Harvest35	U35_18725	822	3e-25	749 - 808	100	60 / 60	plus

Contig Sequence (822 bp)

>U35_18725 822 Hv_44K_v2
GCGGTTCCAGAGCATCCTCGCCCACCTGTGGCGCGCCACCACGCGCGCAAGGGGACTTCG
CCACAACGAGACCTCCAAGATCCGTCTGTCGGTGGACGGACGAGACCGCCTCGGCGTGCC
GGCCGAGTACGCCGGTAACCTCGTCCTGTGGGCGTTCCCGCAGGCCACGGCCGGCGACCT
GCTGAACCGGCCGCTGAAGTATGCCGCGCAGACCATTCACGACGAGGTGGCCAGGGTGGC
CGACGCCGAGTACTTCCGGTCGTTCGTCGACTTCACGAGCTCCGGCGTCATCGAGGAGGA
AGGGCTGGCACCAAGCGCCGCGTTGAACCTGAGGGAAGTGCTGTGCCCGGACCTGGAGGT
GCATAGCTGGCTCACCTTCCCGTTCTACGACCTCGACTTCGGCACGGGGACGCCATCGTA
CATCATGCCCTCTTACTTCCCGTTCGAGGGGCTCATCTTCCTCATGCCATCCTACATCGG
AGACGGTAGCGTCGATGCCTTCGTACCCGTCTTTCAGCATAACCTCGAGGCTTTCAAGCA
ATGCGTCTACTCCATCGATGATCTCCATGCATGAACCGTGAGATGCATCGAGTAGCAGCC
AATCCATCACAAGAATATGCAGCACAACACGTACGATTCAAGTTAAATTACTTTCGTGCC
AAAATAAGTCTCCATGCCATGCATCAATGCATGCGATGAAGCTCCAAAAATAAAACTGCA
TATATATGCATGCATGTGATCGCTATATGCGGTGCAATAGCTTGCGTCCATTCCTTGTTA
TATATATGCAATAGTTCCGCGCCATAAAAAAAAAAAAAAAAA

Homology of Contig U35_18725 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g37180.1	438	1e-90	protein\|transferase family protein, putative, expressed
Brachypodium v1_2	Bradi3g02310.1	470	7e-104
Arabidopsis v10	None