- Probe CUST_5986_PI390587928
- Source Contig U35_18733
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5986_PI390587928 | Hv_44K_v2 | ATCGTATCATTTGTGCTTGTTTTTGGCATGGTTATCCAGTTCGGATGGTCCAGCTTCGCA | 405 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.083 | 0.145 | 0.598 | 2.000 | 1.506 | 2.693 |
| Raw | 4.623 | 14.405 | 58.192 | 313.856 | 79.398 | 155.196 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_64213.8 | 1069 | 2e-24 | 469 - 528 | 100 | 60 / 60 | plus | ABC12095 |
| MLOC | MLOC_64213.1 | 2423 | 2e-24 | 2208 - 2267 | 100 | 60 / 60 | plus | ABC10591 ABC12095 |
| MLOC | MLOC_64213.2 | 2859 | 2e-24 | 2287 - 2346 | 100 | 60 / 60 | plus | ABC10591 ABC12095 |
| MLOC | MLOC_64213.5 | 2185 | 2e-24 | 1805 - 1864 | 100 | 60 / 60 | plus | ABC10591 ABC12095 |
| MLOC | MLOC_64213.6 | 2171 | 2e-24 | 1791 - 1850 | 100 | 60 / 60 | plus | ABC10591 ABC12095 |
| MLOC | MLOC_64213.3 | 2463 | 2e-24 | 1891 - 1950 | 100 | 60 / 60 | plus | ABC10591 ABC12095 |
| MLOC | MLOC_64213.4 | 2449 | 2e-24 | 1877 - 1936 | 100 | 60 / 60 | plus | ABC10591 ABC12095 |
| JLOC1 | JLOC1_42140.4 | 2489 | 8e-25 | 1810 - 1869 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42140.3 | 2521 | 8e-25 | 1842 - 1901 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42140.2 | 2885 | 8e-25 | 2206 - 2265 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42140.1 | 2475 | 8e-25 | 1796 - 1855 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC51435 | 526 | 3e-25 | 405 - 464 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC12095 | 1092 | 3e-25 | 456 - 515 | 100 | 60 / 60 | plus | ABC12095 |
| Harvest35 | U35_18733 | 580 | 3e-25 | 406 - 465 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_18732 | 1134 | 3e-25 | 499 - 558 | 100 | 60 / 60 | plus |
Contig Sequence (580 bp)
>U35_18733 580 Hv_44K_v2 TTGGTACCCCTCCAACGCCTGCTTCGTGGGATCAGTTCGCCGGAAGATCAACAGCTTTAG TTGCCTACTGATCCCTCTTTTGCTTGATCGTATTTTCCAGTGTGTGGAACGATGCCAGAG CACTCTGAGAATGCCACAGAGAACATGATGAGTGGCATCATGGACGCCATCGCCGACAAG CTCCCCAAGCAAAAGTCTGTCAGGTTCGACATCGACGATCAGGGCTCCATCTCCGGCCAG GCCAAGAAGCTCTTCGGGGGCCACAAGTCTGTCCACCACATCCTTGGCGGCGGAAAATCC GCCGACGTGCTACTGTGGAGGAACAAGAAGATCTCATCCAGCGTTCTTGCTGTTGCAACA GCTGCCTGGGTCTTCTTCGAGTGGCTCGGCTACCATTTGCTGACCATCGTATCATTTGTG CTTGTTTTTGGCATGGTTATCCAGTTCGGATGGTCCAGCTTCGCAGGCATGCTCAATGGG TCTCCTTCTAACGTGCCCCGTGTAGAGTTGCCAGAGGAGCTGTTTGCAAACATCGGTGCC GCTGTCGGCGCCCAGGTGAACAACTTCTTGGGAAGCCTTC
Homology of Contig U35_18733 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os07g04910.1 | 247 | 3e-83 | protein|reticulon domain containing protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g58190.2 | 172 | 7e-92 | |
| Arabidopsis v10 | None |