barSeed - Barley Seed Development Database

Probe CUST_5960_PI390587928

Source Contig U35_26296

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5960_PI390587928	Hv_44K_v2	TCCCATGGTCTTCTGAAATCCATTCATTGTTTCAAAAATCAGGTGCCTTTGCTGTATACC	332	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366344	2696	2e-24	1952 - 2011	100	60 / 60	plus	ABC06657 ABC08195
Harvest21	ABC26358	493	3e-25	333 - 392	100	60 / 60	plus
Harvest35	U35_26296	493	3e-25	333 - 392	100	60 / 60	plus

Contig Sequence (493 bp)

>U35_26296 493 Hv_44K_v2
TTACTGCCCTCGTCAATGGTGTCCCAGTTTTAATCATTTTATCATGGATTTTCAGCAAGG
CCAGAAGCAAGATTTGCTTTTTGATTCCTTTTGGCTGATGACATTCTTCGAATCAATTTC
CCTTGCCATACCATCATGCTTGTTTTTCATTGCCTCGGCTTTGCGTTTGAGGCTGCGATT
TCTGTACTGTTATCTTTATCAATATGATAATTTCTAGGTTTCTTGGACTATGCTTGATTA
GGAACTCTGATGCATGGGGTTATTTTTGAGTTCCATTCATTGTTTCAAAAATCATTGTTT
CAAAAATCATTCCTCCCCCTTGTAAATTCTAATCCCATGGTCTTCTGAAATCCATTCATT
GTTTCAAAAATCAGGTGCCTTTGCTGTATACCTGGAGCCCTGGCATGCTGATATTTTTGA
GTTCCTTGATCTCAGGAAGAACCATGGCAAGGAGGAGAACCGTGCGAGGGATCTTTTCTT
TGCTCTCTGGGTT

Homology of Contig U35_26296 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None