barSeed - Barley Seed Development Database

Probe CUST_5892_PI390587928

Source Contig U35_9232

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5892_PI390587928	Hv_44K_v2	CAGTTCGAATGACACTGCTTGTAGTGCTAGCATGGTTGACTGTTGTGATATTCAACACTG	1040	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373337	4492	2e-24	3263 - 3322	100	60 / 60	plus	ABC13844 ABC17852 ABC21581 ABC41122 ABC44969
MLOC	MLOC_76567.3	7548	2e-24	4300 - 4359	100	60 / 60	plus	None
MLOC	MLOC_76567.5	1999	2e-24	1853 - 1912	100	60 / 60	plus	None
MLOC	MLOC_76567.2	8146	2e-24	4300 - 4359	100	60 / 60	plus	None
MLOC	MLOC_76567.1	3126	2e-24	2587 - 2646	100	60 / 60	plus	ABC21581
MLOC	MLOC_76567.4	3540	2e-24	2426 - 2485	100	60 / 60	plus	ABC21581
JLOC1	JLOC1_51056.1	3496	8e-25	2083 - 2142	100	60 / 60	plus
Harvest21	ABC26630	1314	3e-25	1041 - 1100	100	60 / 60	plus
Harvest35	U35_9232	1314	3e-25	1041 - 1100	100	60 / 60	plus

Contig Sequence (1314 bp)

>U35_9232 1314 Hv_44K_v2
ATGGTGTGTTTCGTGTTTCAATTTTGGAAATGTGGATGATGTCAACTCAAATGCTTCAAC
AGCTTATATCCTTTTAATTGGATATGGATTTATCTTTTCACTGGGTGTAACTTTTGCTGG
GATGCATACTTTCAAACAATACTCGAGGGGAGAGCGCCTTCTGATAGCCATTTTCTTCAA
GATCTTGGCTGATGGGACATGCTGGTTGTTGAGCCCCTTTAGATGGCTGCATCGTATACA
TGCAATGGTCCGCAAGACATTCTCTCTCTGCCAGATGTTCTTTAGAGGGATTGGAAAATT
GATCACTTTTGCCAACTTTTCTCTTAATGTCATAAATATGGTTGTAGTATTCCCCTTGCT
CTTTGGCTGGTCTCTTGATATCTGTACTTCGAAAATGTTTGGTGCAACAATACATCAAAG
GTTCAAACTTATGTGGGCTTCATCCTTTTCTTCTATTGCTCTACATTGGCTTACTGGATG
CATCTTTTTGATGCTACGCTCCAAGTTGTCCAGTCTTCTTCGCCCGATACTGAGGCGAGG
AGTTAGTATTCCATTTTTCTATCTTGCTGAAGAGCATAATGTGAAACTATGCTTGCGTGA
ACCATTCTATATTATTTCTTTCAAGAAGCTTCCTCGTCTTTTTGCTGGCATTATCAATGT
TGGTATGGTCTTTCTTGTTCCTGTTCAAATCGCTAGTGGATTGGCACCTAAGTTGTTCCC
GTTAGATATCACCTACTTCGATCCTCCTACTAAGGGCACATCATTTTGGCAAGCGCCACG
GACCTATGCAGAGTTACTTTCTGGCATTGTTCTTCTGAGGTTTCTCATTTGCAATACACT
CAAATACCTTCAACCTAGCAAACTGATGGAGAAGATACTGCAAAATTGGTTTGCCACTAC
TGGACAAGCTCTTGATCTATTAGATTTGTTGACTGTCCAGCCTGCTGATGGAGCCTGTGG
ACATGAGGTTAGTAATAGCGTCGCACCAAATGACCAGTATGGCAGCACTTATGAAGCTAT
GGCTAATAGGAGATCTGTTGCAGTTCGAATGACACTGCTTGTAGTGCTAGCATGGTTGAC
TGTTGTGATATTCAACACTGTTATGCTTATCTTTCCAATCTCAATTGGGCGTGCATTATT
GTTGGCCATCCCTCAGCTGCCAGTAGTAGGTGGATTGAAGTTCAATGATCTGTTTGCATT
TGCTGTTGGATTTTGCACCATATCAACTATTATTGCCACATCTAGAGATTCATTTGTCTA
CATGACTTCTGGGAGAACATGCCTTCTAGCTTCTGCTATCTGCAAGTGGGGTAT

Homology of Contig U35_9232 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g01040.1	611	2e-124	protein\|zinc finger, C3HC4 type domain containing protein, expressed
Brachypodium v1_2	Bradi3g12860.1	903	0.0
Arabidopsis v10	None