barSeed - Barley Seed Development Database

Probe CUST_5802_PI390587928

Source Contig U35_7773

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5802_PI390587928	Hv_44K_v2	CGAGATCTACACCTACGTGCCACACGTCATCAACAAGATCACACGCGGCGTAGAGACGCT	553	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61496.1	1279	7e-23	599 - 658	98	59 / 60	minus	ABC03024 ABC03026 ABC45116
JLOC1	JLOC1_40188.1	1360	4e-23	681 - 740	98	59 / 60	plus
Harvest21	ABC34112	116	3e-25	57 - 116	100	60 / 60	plus
Harvest35	U35_7773	613	3e-25	554 - 613	100	60 / 60	plus

Contig Sequence (613 bp)

>U35_7773 613 Hv_44K_v2
ACTTAGCAATGCTGACCAAGGCGGTGGTGCCCATCCTCTTCCTCCTCACCGTCTCCCGCT
GCGAGACCTCGCAGAGCTACGATGCGATATACAACTTCGGCGACTCCATCTCCGACACCG
GCAACCTCTGCACGGGCGGCTGCCCGTCGTGGCTCACCATGGGCCAGCCGCCGTACGGAA
CCAGCTACTTCGGCCGCCCGACCGGACGCTGCTCCGACGGTCGCGTCCTCGTCGACTTCC
TCGCTCAGTTCTTCGGTCTGCCACTGCTTCCGCCGTCCAGGACGAACGGCACCGACTTCA
GGAAAGGCGCAAACATGGCCATCATCGGCGCCACCACCATGAACTTGGACTTCTTCGATT
CTCACGGCCTGGGCAGCAGCATCTGGAATAACGGGCCTCTGGACACGCAAATCCAGTGGT
TCCAGCAGCTCATGCCTTCCATCTGCGGCGGCGCCAGTGATTGCATGAGCCACCTGAGCA
AGTCCCTGTTCATCTTGGGCGAGTTCGGGGGCAACGACTACAACGCCCCGATCTTCGGCG
GCAAGAGCCTCGACGAGATCTACACCTACGTGCCACACGTCATCAACAAGATCACACGCG
GCGTAGAGACGCT

Homology of Contig U35_7773 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g11620.1	367	4e-108	protein\|GDSL-like lipase/acylhydrolase, putative, expressed
Brachypodium v1_2	Bradi2g06940.1	368	2e-105
Arabidopsis v10	AT5G45910.1	372	4e-52	GDSL-like Lipase/Acylhydrolase superfamily protein \| chr5:18620420-18622264 REVERSE LENGTH=372