barSeed - Barley Seed Development Database

Probe CUST_5797_PI390587928

Source Contig U35_7778

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5797_PI390587928	Hv_44K_v2	GATTTCTGATTTGGAGTTGGTGGAAACAATTGATGGGTACTGTGATGTGGTTTATGGGAC	897	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.608	0.808	1.041	1.200	1.362	1.595
Raw	51.625	92.595	120.206	184.091	85.511	110.190

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248279.1	2729	2e-24	950 - 1009	100	60 / 60	plus	ABC16347
MLOC	MLOC_4395.1	1185	2e-24	384 - 443	100	60 / 60	plus	None
MLOC	MLOC_4395.2	636	2e-24	451 - 510	100	60 / 60	plus	None
JLOC1	JLOC1_2724.2	1725	8e-25	162 - 221	100	60 / 60	plus
JLOC1	JLOC1_2724.1	1714	8e-25	151 - 210	100	60 / 60	plus
Harvest21	ABC16493	960	3e-25	898 - 957	100	60 / 60	plus
Harvest35	U35_7778	960	3e-25	898 - 957	100	60 / 60	plus

Contig Sequence (960 bp)

>U35_7778 960 Hv_44K_v2
GCGACCGAAATACCACTCGTCCCTTCGCCACCGCACGCGGTCGGAGATGGCGACGCCCTC
GCCGCTTCCGCCGGCCGGCGAGGTAATCGAGGTGGAGAACTCGGAACCGGGCTCCCCGGA
CGCCGGAAGCCGGAGCAGCGGGAGCGGGAGCGGCAGCGGCCGGAGCTCGTCGGAGTACTC
CGGGTGGGTCTACCACCTCGGCGTCAACTCCATCGGCCACGAGTACTGCCACCTCCGCTT
CCTCGTCATCCGCGGCAAGTGCGTCGCCATGTACAAGCGCGACCCGCACGACAACCCGGG
ACTCGAACCTATCCGAAAGGGTTTTGTCAGTCCCACTCTTGTGGTGGAGGAGGTTGGTCG
CAAAAAGGTCAACCACGGGGATGTTTATGTCTTGAAGTTGTACAGCAAATTGGATCAAAC
GAAGAAAGGAGAGATTGCATGTGCAACTCCTGGTGAAGCTCAGAAATGGACCGAAGCATT
TGAGCAGGCTAAACAACAGGCTGAGTATGACCTGACAAGAGGGGTTAACTGGAAAAGATT
GCAGAGTGAAAACGAGTTTAATCTTGATGGACATCGACCTCGGGTAAGAAGAGGCTTGGG
GAAACTTGTGCGCATTGGCAAAGGACCAGAAATGCTCCTTCGACAGTCCTCCGATCTTCA
AAGCCATGAAAGGGTTAACACAAACTTTGGAGGTGATACTGGAGATGCACTTGAAGCACA
TGAATGGAGATTTGTTCGAACATTAAATGGAATTAGAATTTTTGAAGATATTGCAAACTC
AAAGGGTGGAAAGGGGATACTTCTCAAGTCTATTGGCGTGGTTGGTGCAAATCCTGACAC
TGTGTTTGAAATGGTTCTTAGTCGGGATAAGCATAAGCGATACGAGTGGGATATGTTGAT
TTCTGATTTGGAGTTGGTGGAAACAATTGATGGGTACTGTGATGTGGTTTATGGGACCTA

Homology of Contig U35_7778 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g34060.3	756	3e-143	protein\|DUF1336 domain containing protein, expressed
Brachypodium v1_2	Bradi3g37010.1	769	1e-166
Arabidopsis v10	AT5G35180.4	811	3e-102	Protein of unknown function (DUF1336) \| chr5:13424538-13432787 FORWARD LENGTH=811