barSeed - Barley Seed Development Database

Probe CUST_5777_PI390587928

Source Contig U35_7799

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5777_PI390587928	Hv_44K_v2	AAGGTCTTGATCTGGTGCCGATTCGGGCAATGTTATCTAATTCCAAGGTTTTCTGCTAAA	621	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373337	4492	7e-23	4436 - 4492	100	57 / 57	plus	ABC13844 ABC17852 ABC21581 ABC41122 ABC44969
MLOC	MLOC_76567.3	7548	7e-23	6157 - 6213	100	57 / 57	plus	None
MLOC	MLOC_76567.2	8146	7e-23	6157 - 6213	100	57 / 57	plus	None
JLOC1	JLOC1_51056.2	983	4e-23	907 - 963	100	57 / 57	plus
JLOC1	JLOC1_51056.1	3496	4e-23	3256 - 3312	100	57 / 57	plus
Harvest35	U35_7799	695	3e-25	622 - 681	100	60 / 60	plus

Contig Sequence (695 bp)

>U35_7799 695 Hv_44K_v2
GGAAGCTTACTCGGGCAAAGAATGATGGCTTTGCAGGGTTGAGGGCAAAGTGGGTCTTGC
AAGATATATTGATGCCTATCACCATGAAGCTAGTGATTGTTCTGTGTGTTCCTTATGTGC
TTGCGAAGGGCCTTTTCCCAAGGTTTGGCTACTCTGCTGCGGTGAATTCGGCAGTGTACC
ATTTCGCATGGCTGGGCAGCCTCGCCTCGTGTGGGCTCTGCTACCTTGCCAAGGTATTCT
GGGGTGCCCTGGTGAAACTCCACGATTCTATCAGGGATGAGCGCTATATTATCGGGCAGA
GGCTGCAAGACTACACTGACAATAGCTGAAGGCCCCTTTCCTTGCAACTCAGTTTTCTAT
AGTAGTTAGGTTTAAACATTACAACAGTCGGCGCCAGGAAGCGAAGAGGCCTTGTTACTG
ATGGAGATGTGATACGGTGAGATGTGGCGGAGGTAGTTTGCTTGTAAATATGGATGTAGT
TTTAGTTGCCATCACCTGTTGGTCATGATCTTGTGCCGGTTTGCTAGGTCGCTGAATCTT
GAGAATTTGATCGTAAACGTGGTTGTAATAGCCTACGGTTCTTAGGAATCTCATACACTT
TTTGCGATCATCATCACCCCAAAGGTCTTGATCTGGTGCCGATTCGGGCAATGTTATCTA
ATTCCAAGGTTTTCTGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_7799 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None