barSeed - Barley Seed Development Database

Probe CUST_5767_PI390587928

Source Contig U35_8110

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5767_PI390587928	Hv_44K_v2	GTGATCGTATGATACCTGTGAATCTGTGATGGCGATGTGATTATTTGACGGTTCAAAAAA	1135	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.249	2.741	1.224	0.727	0.496	0.333
Raw	60.572	83.568	31.645	31.585	5.948	3.602

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC17554	1205	3e-25	1136 - 1195	100	60 / 60	plus	ABC17554
Harvest35	U35_8110	1205	3e-25	1136 - 1195	100	60 / 60	plus

Contig Sequence (1205 bp)

>U35_8110 1205 Hv_44K_v2
GAAGAAAGATCCAGCAGAAGGCAACAACCGCCAAAGATTGAAGGAGAGTGGATCCGGCTC
CCGGCGAAATGGCTGCACCGCTGCCGCCTCCGCCATCGCTGGAGCCGGAGATCGGCCCTG
ACGGCCTCGCCAGAGACTCCCCCGTCCTGGCCTACACCGAGAAGGTCATTGCGGAGGAGC
AGCTGCAACTGAAGAAATATATTAAGGAAAATTATTCCAAAATTCGGGATGTTGAGAAGG
AGCTTGAGAATCTGACTCTAGAAGTTAAACTGACAGCTGGACCAAAGAAAGCAGCACTCG
AGCATTTGAGGAAAAAGATTGAGATTTCAACTGAGAGAATACGTTTGGCTAAGGTGAAAG
AGGACGATGCAAAAAAGGCCTGGGAAGCTGCTGCGCAAGTTGTTAAAGAGGAAGAGGAGG
CTAAACAGAGGCTATGTGACGACCTTAACCGGTTGGTTCAAGAGAGTGCGGCTTCACAAT
ATTCGAGGTTAGAAGAATTAAAAAGGCGTTTAGAATGTCTAAATCCCATCAGGGCTTCTG
TTGATGTTTCTGGTATCAACACTGTACAGCATGCTACCACTAATTCGGTACGGCAGCAAC
CCACATCACAAAATCTAGCGAATGCAATCTCCCCTGCAAGCAATGTCCATGAGCCCGCCA
CCAGCGGAACACAGCAACAACCTGCCAAGGCGGAAATGAAGCAGGGATCATCAAACTCGG
GAGGAAGAGGGAGAGGCGGTGTGATGGTCCTCCCCAAGGGAAGGGGAAGCTCTGGATCAG
GATGGACAGGTGCTGGATTTGAAACATGATGCTGGGATCTGTAGTTATATACTTGAAAGA
ATTGGCATGGTTGTGTTGGTATAAAACGATTGCTTGGTTGGAACTGGAATGTTGAAAGTG
TATATATTTTGTGCAACAATAGAACATGTTATTCTTGAGAGATGTAAGTTGTAAACACCA
TTATTAGTAATGGAGTAGATATGCTGCTAATACAGTCCTCTTATTATGGTTAACGGAGTA
GATATGTCAGGAGTCTTTGATTTGCCTCTACAATGAATGGCTATGAAGGAGATTTTCACA
TTACTTGAGGAAATCATTCCTTTGTATGGCAACATCCAGATGGAGATGTAGCCTAGTGAT
CGTATGATACCTGTGAATCTGTGATGGCGATGTGATTATTTGACGGTTCAAAAAAAAAAA
AAAAA

Homology of Contig U35_8110 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g11060.1	249	1e-81	protein\|ACI13, putative, expressed
Brachypodium v1_2	Bradi3g22920.1	246	6e-90
Arabidopsis v10	None