barSeed - Barley Seed Development Database

Probe CUST_5672_PI390587928

Source Contig U35_1634

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5672_PI390587928	Hv_44K_v2	ATGGATGAGCAGGAATGGAAGTATTTGCATTGGATGTGTATTAAGTTAGATATAGCAGTT	1040	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370884	1218	2e-24	1082 - 1141	100	60 / 60	plus	ABC05745 ABC08424 ABC08425
MLOC	MLOC_4366.1	833	3e-22	778 - 833	100	56 / 56	plus	ABC05745 ABC08424 ABC08425
JLOC1	JLOC1_2704.1	1030	8e-25	778 - 837	100	60 / 60	plus
Harvest21	ABC05745	1189	3e-25	1041 - 1100	100	60 / 60	plus	ABC05745
Harvest35	U35_1634	1189	3e-25	1041 - 1100	100	60 / 60	plus

Contig Sequence (1189 bp)

>U35_1634 1189 Hv_44K_v2
GCTTCTTCTTCTCTCTCTTCTCTCAACCCGAATCCAAATCCCAAATCCCCAACCCGGCGA
CGATGGCCCGCGGCAGCCGCTCCGGGAGTAACGGCGGCGGGTGCGCGCGCTGCTGCCTGG
GGTTCCTGCTCAAGTTCCTCGCCTTCCTCCAGGCCTTCGCCGCCGTCTCCGCCGTCCTCT
ACGCCGCCTCCATCCTCTCCCGCTGGTCGCGACAACACGAGCTGCGCTTCGACCATCTCC
TCCCGGACCTCTGGTTCGCGTGCGCCGTCATGGCCGCCGGCCTCCTCTACTGCGCCATCC
TCCTCGCGGGCTACGTCGCCGCCGAGGTCAACAGCGGGTGCTGCCTCTGCTTCTATACCA
TCTTGGCCATGACGATGATGCTGCTGGAAGCTGCCGTGGCCGGCCAACTCCTCCTCAACG
AGCACTGGATCCAGGATCTGCCGTATGACCGCACCGGAGAGCTCGAGAGCCTCGTCTCCT
TTGTCAAGAACAACCTCGACCTCTGTAAATGGGCTGCTGTCGCTACCGTCGCCACGCAGG
CGTTCTCACTTTTCTTGGCAATGACTCTACGAGCCATGGTTTCGCCCGCCAATGCGGACT
ATGATAGCGAAGAAGATTTTGTGGTCATAAGGAGGCCGCTGCTTCTTGCCCAAGGTGCTC
CAGCCTATATCCCTACCACGGCCGACCCAAGAGGTGCCCAGCCTGGCCTATGGAGCTCAT
CGATGAGGCAAAAGTATGGATTGAACTCCACAAGCGACTACACCTACAACACACTGGATC
AAAATGCAGTACGGCCACAGTGAGAATCTGTGTGACTGATGACGAAGCACATATCATATA
TGCAGTACATAAGTCATATCTTGTAATATGCCATGGTGTAATGCACACTGTATACATTTG
TATGTCCAATCATTCTGTCAATCTGGATAAAATCCGCAACTTAGTCATTGGGACAGCCAG
GAGGTGGCCGTATGTAAATAAATTGTTCCATCTTGTTGGATGTTTTGGGCTGGCTGGATT
TCTTCAATGTAGTCGGAGAGATGGATGAGCAGGAATGGAAGTATTTGCATTGGATGTGTA
TTAAGTTAGATATAGCAGTTAGTAAAAGAACATTATAAGGTAATGCTAGTACAATTTTCA
TTTGGATGATGACATCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_1634 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g51480.1	243	3e-99	protein\|expressed protein
Brachypodium v1_2	Bradi1g29240.1	242	1e-113
Arabidopsis v10	None