barSeed - Barley Seed Development Database

Probe ABC08425

Source Contig ABC08425

barSeed

Links

Affymetrix Source Sequence (697 bp)

>ABC08425 697
GCACGAGGCAACAATGAAGATTTTGTGGTCATAAGGAAGCCGCTGCTTATTGCCCAAGGC
GCTCCATCCTATCTCCCTACCACGGCTGACCCCAAAGGCGTCCATCCGAACCTATGGAGC
TCATCGATGAGGCAGAAGTATGGACTGAGCTCCTCACGGGACTACACCTACAACACACTG
GATCAAAATGCAGTGCGACCACAGTGAGAAGCTTCTGTGCGACAGGTGATGAAGAAGGAA
GGCCATGCATGGCTTTATTGGAAGCACCTGTGCAGCATATTTGTAGTATCTTGTAATATT
CCATGGTGTGATGCGCACTGTATACATCTGTGCGCCTAGTCACTCTGTCAATCCCGAACT
CATTGTGCATAGTTCCGTCATTAGTGAAGATTGTATATGTGTGACCCTGGTTGGCTAGTT
GGAAAGGACATGTTGTCAACATTTCCTTGGGTGTTTATTAAGCTAGGTAGAGATAAGCAG
TTTATTAAGTGAAAAAGATCCTGTGTAAAGTAATGTTACTAGCACAGTTTTAGTTGTGTG
GTGAGATGGTGTTGTTAGGCCGCCAAGTATTACGTGCTATGTATCTGTTCCTAAACCTCC
TCTTTTCAGTGCAGCAGCACTTTTGCATAAAAACTTCGTCTCATAATGTAAGACGTCTTA
CATTATGGGACGGAGGGAGTACTATACTAAATAACAT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_5948.2	3899	0.0	734 - 1366	98	626 / 642	None	ABC05745 ABC05986 ABC05987 ABC08424 ABC08425
AK251172.1	1197	0.0	614 - 1197	100	584 / 584	None	ABC05745 ABC08424 ABC08425
MLOC_5948.1	5887	2e-60	1317 - 1446	99	129 / 130	None	ABC05986 ABC05987 ABC08424 ABC08425
AK370884	1218	3e-62	653 - 868	87	190 / 219	CUST_5672_PI390587928	ABC05745 ABC08424 ABC08425
MLOC_4366.1	833	2e-60	349 - 564	86	189 / 219	CUST_5672_PI390587928	ABC05745 ABC08424 ABC08425