barSeed - Barley Seed Development Database

Probe CUST_5636_PI390587928

Source Contig U35_1670

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5636_PI390587928	Hv_44K_v2	GGACCGAGTTCCCCCATAAAAACAATTGTTGATGAACTAAATGAAAAGGATTTCTCAATA	985	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358017	1420	2e-24	1339 - 1398	100	60 / 60	plus	ABC09264 ABC26240 ABC46402
MLOC	MLOC_61632.1	261	2e-24	139 - 198	100	60 / 60	plus	ABC09264 ABC46402
MLOC	MLOC_49676.1	398	6e-24	161 - 219	100	59 / 59	minus	ABC09264 ABC46402
MLOC	MLOC_4351.1	839	3e-21	165 - 224	97	58 / 60	minus	ABC09264 ABC46402
JLOC1	JLOC1_40278.1	282	8e-25	140 - 199	100	60 / 60	plus
JLOC1	JLOC1_31774.1	393	3e-24	150 - 208	100	59 / 59	minus
JLOC1	JLOC1_2692.1	774	2e-21	53 - 112	97	58 / 60	minus
Harvest21	ABC09264	1061	3e-25	986 - 1045	100	60 / 60	plus	ABC09264
Harvest35	U35_1670	1061	3e-25	986 - 1045	100	60 / 60	plus

Contig Sequence (1061 bp)

>U35_1670 1061 Hv_44K_v2
GGAATTCGGACGAGGCTGTGTTGGGGTGGCTAGTTTCGCGTGGATTTATGTGTGCTAGGT
TACACACGTCTGTACCAATGTTGGCCTAACTATTTATTTATTACTGCAGACGTTAGCTTG
GAAGAACTGGAGGTGACTTTTGCTCCCTCATCCATGGGTGGAATTTTCTGTGAGCGAATC
CGCATATCTAAAATGCCAAGGTGGCAGTTTCAAAGCTATGCAAATCAAATACATGAATGT
TTCTACCGGTTTGTGCCAATGTGAGATGGGTGAATGGCAAGCTCTGCACGGTGGCACGTG
GAATGCTGTGAAGTCTCCCTACAACAGCAGATATGTTGATGTGAAACTTGCTCATAAGAA
ATATGTTGTCTTCAGCCTTTCCATTCAGGAAGAGCTTCAGAAGTGGCGTTTAGCTTGCCT
TGGTATTGGATTTGTTCTGCTATTCCTGTCACCCATCGTTAGTAAATGGGCACCTTTTTA
CTATAGCAGCTCTATGGCTCTTGGAATCCTACTTGTGGTGCTGATTGTCCTTTTCGAGGG
TGCCGAAGCTCGCTAACGGCATTCCGGTCGCCGTAGTGCGCCGGCGGTGGGGGCATGGAG
GAGTTACCGAGGGACGGCGAGGCGGCAAAGGGCTGGTGCCGGAGCCCTCTAGCGGCATCC
CAATCGCCGTAGTGCACCGGTCCTGGGGGCATGGAGGAGTTGCGGCGGTGGCGAGGGCCG
AAGCCTTCACCGAGGAATGACGAGGCAGTTGAGGAGGCGGCACAGGGCTGGTGCCGGTGC
TCGCTGGTATAGTCCTTCATAGGGGGACGACGAGGGAGCGGAATCCGCATGGATGGATGG
CCACGATGCTCCCAATGAACCTGTTGGTGGTGAAAACACAGATATCGCTGTCTTCATTTG
TGCTGGGACATGTGGACAGCGGCGACGGGGCAGTGGGGAGAGCAGGCAGCATAAATATTA
GGGCCTTGAGGAAAAAAACTTCCATGGACCGAGTTCCCCCATAAAAACAATTGTTGATGA
ACTAAATGAAAAGGATTTCTCAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_1670 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None