barSeed - Barley Seed Development Database

Probe CUST_5619_PI390587928

Source Contig U35_505

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5619_PI390587928	Hv_44K_v2	CTGTTTGCTCCTTGTCACGTTCAGATCGTGTGTAATATATGTCTCATCTCGTTCTGTTCT	220	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368228	1175	2e-24	1038 - 1097	100	60 / 60	plus	ABC02669 ABC02670 ABC02671 ABC02672 ABC02673 ABC29512 ABC40934
MLOC	MLOC_14945.1	608	2e-24	188 - 247	100	60 / 60	plus	ABC02670 ABC29512
JLOC1	JLOC1_10219.1	392	8e-25	188 - 247	100	60 / 60	plus
Harvest21	ABC02670	1178	3e-25	1101 - 1160	100	60 / 60	plus	ABC02670
Harvest35	U35_505	312	3e-25	221 - 280	100	60 / 60	plus
Harvest35	U35_411	1286	3e-25	1134 - 1193	100	60 / 60	plus

Contig Sequence (312 bp)

>U35_505 312 Hv_44K_v2
CCACGCGTCCGCAAGCGCGTCGCCAAGGGCGTCCCCGCCGAGTGCTCCATGTAGTCCCCG
TCCATCAAAAGCAAGGTAGCATTGGACCGTCCGTGTATACGTCGATCGCCGGAGGAAGAC
GGCCGGGGATAGGGAAGATGGGGGCGTCTGTATTGTACTGTATGATAAATAAGGACCAGT
GAGGGGGGATAATGTGAAATGGAGCGGGTGGTAGATTCTTCTGTTTGCTCCTTGTCACGT
TCAGATCGTGTGTAATATATGTCTCATCTCGTTCTGTTCTAAAAAAAAAAACAAAAAAAA
AAAAAAAAAAAA

Homology of Contig U35_505 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None