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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_5612_PI390587928Hv_44K_v2TGTAACCGGGTAATGTTCCTTGTTCTTCTTAAGAAGTAGGGCCTGGAACCATATTCAGTT3GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.6491.4181.0760.9610.4590.510
Raw 569.174782.583512.691734.521121.434144.453



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_46573.417158e-251486 - 154510060 / 60plus
JLOC1JLOC1_46573.317748e-251545 - 160410060 / 60plus
JLOC1JLOC1_46573.217338e-251504 - 156310060 / 60plus
JLOC1JLOC1_46573.119948e-251765 - 182410060 / 60plus
Harvest21ABC0859416263e-251564 - 162310060 / 60plusABC08594
Harvest35U35_5088593e-254 - 6310060 / 60minus



Contig Sequence (859 bp)

>U35_508 859 Hv_44K_v2
GTGAACTGAATATGGTTCCAGGCCCTACTTCTTAAGAAGAACAAGGAACATTACCCGGTT
ACAGCTTTGCAATGGGCTAATCCATTACAGTCCCGGTCCGACCAGCTTAGCAGCTAGCAA
GCCTTTGCTTCTGGCTTCACTGTGTGTGTAGACAACCAAACCTACATAGTTCAAGCTCAA
GAGCAAGAATATGAACCATCGCTCAGGGGCTCGGGGCAGAGAGAGCAAGAAATAATGCAA
CATGTTCACCGCCATGGACGACGAAGCACTCCACTAGGTAATGTACAGCTGATCCTTACA
AGGCTAACTATCCAGTTAACACAACATAAACCAAACCTCTAATAAACACTGAAAAACCCA
TAGAGGTTGACGAAACGTCAAGCTCTATAATACACCAAACTGTGCGTGAGAAAGCAGCTC
TCCCCTGCTATGCTTGTCGAAAACAAGCCCACGAAGAAGGTCAGGACGATCATGGTACTT
AGGGTAGTCGTCTGATCCCGGTCCTCCTAGTTTCCGTATCTCCTGCCAGACTCCATGGTG
TCAAGAATAGGACTGGTGTCTCTTAGGGCGATCCCGCCCTGACCTTCCCCTTCTTCGGTC
TCCGTGGGTGGACGCACGCTGAAGGAGTTTGCAATGCCACTGTTGCGTGCCTCGGCTAGC
TGAAGGGTATATGCGTGAGGCCACAGTCCTGCAACGGAAATTGTTACTGTTGTCGCTGAA
AAACACGGAGGAACACAAAACTCGGTAGGTAGAAAGAGTAGAAGGAGGCACCATCTGTAT
CATAAGGATATGGGAAAAATTGCAGGTAACAAAATGAAGCCACTGTGAGACCTGCAAAGG
GAATAGGGAACAAAATGAC



Homology of Contig U35_508 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None