barSeed - Barley Seed Development Database

Probe CUST_5565_PI390587928

Source Contig U35_14808

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5565_PI390587928	Hv_44K_v2	AAGTAGCAGCCAGCAACCGGACCTGAATTTTGCTGGGAAATGTATGTGAGATTTAGCAAA	959	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.231	1.463	1.057	0.911	0.470	0.491
Raw	6370.250	11592.453	7506.657	10033.037	1837.337	2074.967

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252794.1	817	7e-23	742 - 801	98	59 / 60	plus	ABC02414
MLOC	MLOC_30235.1	3171	9e-22	2368 - 2425	98	57 / 58	plus	ABC02414 ABC12996
JLOC1	JLOC1_20021.1	1038	5e-22	668 - 725	98	57 / 58	plus
Harvest21	ABC02417	1032	3e-25	959 - 1018	100	60 / 60	plus
Harvest35	U35_14808	1033	3e-25	960 - 1019	100	60 / 60	plus

Contig Sequence (1033 bp)

>U35_14808 1033 Hv_44K_v2
CATACACGTNACACATACACATGCAGCTCTTGCTTCTTCTTGCGGTAAACATACATAGCA
GACCAACCTGCTAAAAGAAGGAAAAGGAACAGAGTTCCATGGAGCTCTCTTCTAGGAGAG
GCATCGCCAATCATGCTGCTACTGCAAGCTATTGGTCTTTTATTCTCACGCCTTTGCCGT
CATAGCTAGCAAGACGTATACGCGGGCGTATATATAGAAGCGTGTACACACGCAGAAGCG
CCATTACATTATTCTTATTATTATTAGGTGCGCGAACTCCCCCATCCCACTCCTCGGCCT
CTTCTTCCCCGATCCGAACCCATTCCCACCTCCTCCGCTCCCCGCCGGATCTCGCCACCA
GGATCGTCCGTCCGTCGACCCGCAGGCGAGGCGATATGGCCACCTTTGAGCTCTACAGGC
GGTCCACCATCGGCATGTGCCTCACCGAGACGCTCGACGAGATGGTCTCCAGCGGCACCC
TCAGCCCCGAGCTCGCCATCCAAGTGCTCGTCCAGTTCGACAAGTCTATGACGGAGGCGC
TGGAAAACCAAGTGAAGAGCAAGGTTACTGTCAAGGGCCATCTGCACACCTACAGGTTCT
GCGACAACGTCTGGACGTTCATTCTAACTGACGCGCAGTTCAAGAACGAGGAGATCACCG
AACAGGTGAGCAAGGTGAAGATCGTGGCCTGCGACTCCAAGCTGCTCAGTCAATAAGCAG
CTCGGCGCGAGCTGACTCCCGGAGGCGGGGCTCGAACTCGTTCGATCCCTACCTCGGCTA
GAGAAGAACGCCACCACCGACATCGCCGCCTTCGCCTTCCATGGGCACCTGTAGAATCTC
ATGCCATGCAACGCTAGAGCGTGGCATCGCATCCGCAGAACCTTCTCCCATCCTTGTTTC
GCTGTAATGTTGTTTCCCTGAACTTTTGATACTACATAACTGGTGATGACTGGATGAGTA
AGTAGCAGCCAGCAACCGGACCTGAATTTTGCTGGGAAATGTATGTGAGATTTAGCAAAA
AAAAAAAAAAAAA

Homology of Contig U35_14808 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g01710.1	107	7e-64	protein\|transcription initiation factor IIA gamma chain, putative, expressed
Brachypodium v1_2	Bradi2g39377.1	107	7e-66
Arabidopsis v10	AT4G24440.1	106	3e-58	transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) \| chr4:12633460-12634553 FORWARD LENGTH=106