barSeed - Barley Seed Development Database

Probe CUST_543_PI390587928

Source Contig U35_20099

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_543_PI390587928	Hv_44K_v2	ATTTTCCTCGGCCCCGTCCGGCGAGATCGAGAGACTACCGATAGAGGAAGAAGAAACACG	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65275.2	2291	2e-24	58 - 117	100	60 / 60	plus	ABC05595
MLOC	MLOC_65275.1	3221	2e-24	76 - 135	100	60 / 60	plus	ABC05592 ABC05595
MLOC	MLOC_65275.3	3149	2e-24	47 - 106	100	60 / 60	plus	ABC05592 ABC05595
JLOC1	JLOC1_42947.3	3497	8e-25	3 - 62	100	60 / 60	plus
JLOC1	JLOC1_42947.2	3303	8e-25	76 - 135	100	60 / 60	plus
JLOC1	JLOC1_42947.1	3312	8e-25	76 - 135	100	60 / 60	plus
Harvest21	ABC21597	539	3e-25	15 - 74	100	60 / 60	plus
Harvest35	U35_20099	541	3e-25	15 - 74	100	60 / 60	plus

Contig Sequence (541 bp)

>U35_20099 541 Hv_44K_v2
CAACAACTAGCCCTATTTTCCTCGGCCCCGTCCGGCGAGATCGAGAGACTACCGATAGAG
GAAGAAGAAACACGCCGCCGTCGACCCCATCCTCTCCTCCTCCTCCGCCGCCGCCTCCGC
CTCCGCCGCCGCCTCCGCCTCCGCCGCCGCCATGTTCGGCTCTACCAATCCGTTCGGGCA
GTCTTCCGCCAGCGCTTTTGGGCAGACCTCTAGCAACCCTTTCGGAGCCCAATCAGGGTT
CGGCCAGACCAGCACCGCCACCAATCCCTTCGGCAGCCCGACCACCGCCTTCGGTGCGCA
GACGGGGACCACCTCGCCTTTCGGCGCCACCTCCTCCACCGCCGGTGCGTTTGGTCAGCC
ATCCGCTCCGGCGTTCGGGGCTACATCCACCCCGGCGTTTGGGGCCGCGCCGGCTGGTGG
ATTTGGCCAGCCATCCACGCCGGCGTTCGGCACCCCGTCGTCCTCTCCGTTCGGGAGCTC
CACGCCAGCCTTTGGCGCGTCGCCAGCCCCCGCGTTTGGCGCGGGCGCCACATCCTCCGG
T

Homology of Contig U35_20099 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None