barSeed - Barley Seed Development Database

Probe CUST_5428_PI390587928

Source Contig U35_43384

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5428_PI390587928	Hv_44K_v2	GGATCCTGTCCATGAAAATGTAGGCATTCAAGCAAATTCAGATAGTACTTGTTATCAAAA	13	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61081.1	1456	7e-23	1144 - 1200	100	57 / 57	plus	ABC01222 ABC39980
JLOC1	JLOC1_39884.1	1381	4e-23	1172 - 1228	100	57 / 57	plus
Harvest21	ABC39980	495	3e-25	14 - 73	100	60 / 60	minus	ABC39980
Harvest35	U35_43384	495	3e-25	14 - 73	100	60 / 60	minus

Contig Sequence (495 bp)

>U35_43384 495 Hv_44K_v2
TTTTTTTTTTTTTTTTTGATAACAAGTACTATCTGAATTTGCTTGAATGCCTACATTTTC
ATGGACAGGATCCCTAATCTCTACAGATTCAGAAAAATCTCAAGGATGATTTGGCTTTGC
TTGTTCAGAGCTAAGCGTAGTTACTGCTTGTTCATGGTTTTTTATTTAGTAAGTACAAAT
TTACAGCGTGTCAAAAAAAACATCAATCAACCAGTCAAGAAAAGCTCTCTTTCAGACTGA
TTACCATCATCTCTTGCTGTGGCTCCATCAACAGCCGAGGCGTCGGAATCCGTTGTCGAA
GTTGAAGTGTGGCTGGGCGGGCGGCNCCNNCCCTGANGACGTACTGGTGGTACNCCATGG
CCACGGCGGCGCCGGAGAATGGCCCAACCCAAAAGATCCACTGCTCGCGCCACGCCTTGC
TGTTGTTGTACACCACGGCGGCACCCAAGCTCCTCGCCGGGTTGATCCCGGTGCCGGTGA
CGGGGATGGTGGCCA

Homology of Contig U35_43384 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None