- Probe CUST_5428_PI390587928
- Source Contig U35_43384
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_5428_PI390587928 | Hv_44K_v2 | GGATCCTGTCCATGAAAATGTAGGCATTCAAGCAAATTCAGATAGTACTTGTTATCAAAA | 13 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_61081.1 | 1456 | 7e-23 | 1144 - 1200 | 100 | 57 / 57 | plus | ABC01222 ABC39980 |
JLOC1 | JLOC1_39884.1 | 1381 | 4e-23 | 1172 - 1228 | 100 | 57 / 57 | plus | |
Harvest21 | ABC39980 | 495 | 3e-25 | 14 - 73 | 100 | 60 / 60 | minus | ABC39980 |
Harvest35 | U35_43384 | 495 | 3e-25 | 14 - 73 | 100 | 60 / 60 | minus |
Contig Sequence (495 bp)
>U35_43384 495 Hv_44K_v2 TTTTTTTTTTTTTTTTTGATAACAAGTACTATCTGAATTTGCTTGAATGCCTACATTTTC ATGGACAGGATCCCTAATCTCTACAGATTCAGAAAAATCTCAAGGATGATTTGGCTTTGC TTGTTCAGAGCTAAGCGTAGTTACTGCTTGTTCATGGTTTTTTATTTAGTAAGTACAAAT TTACAGCGTGTCAAAAAAAACATCAATCAACCAGTCAAGAAAAGCTCTCTTTCAGACTGA TTACCATCATCTCTTGCTGTGGCTCCATCAACAGCCGAGGCGTCGGAATCCGTTGTCGAA GTTGAAGTGTGGCTGGGCGGGCGGCNCCNNCCCTGANGACGTACTGGTGGTACNCCATGG CCACGGCGGCGCCGGAGAATGGCCCAACCCAAAAGATCCACTGCTCGCGCCACGCCTTGC TGTTGTTGTACACCACGGCGGCACCCAAGCTCCTCGCCGGGTTGATCCCGGTGCCGGTGA CGGGGATGGTGGCCA
Homology of Contig U35_43384 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |