barSeed - Barley Seed Development Database

Probe CUST_5419_PI390587928

Source Contig U35_29097

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5419_PI390587928	Hv_44K_v2	TCTGGACGGAGAAGACCACTGAAAAGGAAATTTCTGACGATGAAGATGAGGATGAGAAGA	509	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355136	2539	2e-24	757 - 816	100	60 / 60	plus	ABC01204 ABC01205 ABC01206 ABC01207 ABC01213 ABC47677 ABC49921
JLOC1	JLOC1_12920.2	1710	8e-25	1539 - 1598	100	60 / 60	minus
JLOC1	JLOC1_12920.1	1658	8e-25	1487 - 1546	100	60 / 60	minus
JLOC1	JLOC1_12921.1	2823	8e-25	669 - 728	100	60 / 60	plus
Harvest21	ABC28274	643	3e-25	510 - 569	100	60 / 60	plus
Harvest21	ABC01206	2566	3e-25	791 - 850	100	60 / 60	plus	ABC01206
Harvest35	U35_29097	643	3e-25	510 - 569	100	60 / 60	plus
Harvest35	U35_14120	2598	3e-25	791 - 850	100	60 / 60	plus

Contig Sequence (643 bp)

>U35_29097 643 Hv_44K_v2
GACAACAACGTCGGCTCTCCGGCCGGCAACCTTTGTAATGTGTAAAGCTTAAGTAGCGGC
CGCTGTTGCACAGTTCCAGCACGACATTATCCCTGACAAGGCCACCAACACACTCACCCT
TATCGACAGTGGCATTGGTATGACCAAGTCAGACCTCGTGAACAACCTTGGTACCATTGC
AAGGTCTGGCACCAAGGATTTCATGGAGGCATTGGCTGCTGGTGCCGATGTGTCCATGAT
TGGTCAGTTTGGTGTTGGTTTCTACTCTGCTTACCTTGTTGCTGAGAGAGTCGTTGTGAC
CAGCAAGCACAACGATGACGAGCAGTATGTGTGGGAGTCCCAGGCTGGTGGCTCCTTCAC
TGTGACACGTGATACTACTGGAGAGCCCCTTGGAAGGGGTACTAAGATCACCCTCTACCT
CAAGGACGATCAGTTGGAGTACCTTGAGGAGCGTCGCCTTAAGGATCTGGTGAAGAAGCA
CTCCGAGTTCATCAGCTATCCCATCTCCCTCTGGACGGAGAAGACCACTGAAAAGGAAAT
TTCTGACGATGAAGATGAGGATGAGAAGAAGGATACTGAGGAGGGCAAGGTTGAGGAAAT
TGATGAAGAGAAGGAAGAAAAGGAGAAGAAAAAGAAGAAGATC

Homology of Contig U35_29097 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g39140.4	495	1e-88	protein\|heat shock protein, putative, expressed
Brachypodium v1_2	Bradi3g39630.1	700	6e-87
Arabidopsis v10	AT5G56030.2	728	7e-84	\| Symbols: HSP81-2 \| heat shock protein 81-2 \| chr5:22686923-22689433 FORWARD LENGTH=728