barSeed - Barley Seed Development Database

Probe CUST_53_PI415269222

Source Contig TA45304_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_53_PI415269222	Hv_44K_v2	TATTGCATATATGAATATCACATGCCCTGTTCGATTGGATTTGCAACTGGCGGGAGGACT	671	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11875.2	1753	2e-24	625 - 684	100	60 / 60	plus	ABC11619 ABC16291
MLOC	MLOC_11875.4	888	2e-24	583 - 642	100	60 / 60	plus	ABC16291
MLOC	MLOC_11875.1	2178	2e-24	1050 - 1109	100	60 / 60	plus	ABC11619 ABC16291
MLOC	MLOC_11875.3	1792	2e-24	590 - 649	100	60 / 60	plus	ABC11619 ABC16291
JLOC1	JLOC1_7917.2	1646	8e-25	577 - 636	100	60 / 60	plus
JLOC1	JLOC1_7917.1	1706	8e-25	641 - 700	100	60 / 60	plus
Harvest21	ABC12529	891	3e-25	785 - 844	100	60 / 60	plus
Harvest35	U35_20292	891	3e-25	785 - 844	100	60 / 60	plus

Contig Sequence (734 bp)

>TA45304_4513 734 Hv_44K_v2
CGGACGAGGGCGGAATGGAGGCCGCCGCCGACGCGATGCTCGCCGCCGCCAGCCGCGCCT
TCTGCAGCTCCGTCGCCGTCTTCTTCCAGATCCAGGGGTGCTGTATCTGCTTACTACTTG
CTTTTGGTTGGGCTGTTGCTTCATTGGTCAGAAAAAAGGAAATTCGTAAGATGAGGCGCA
AAATGGCATCTGGACATAGTTTTGCCTTTCTTTGTGATGACGTAGATGAGCTTGAGCACT
CCGTGCAGCAGAAATTACCTATGGTCTCTGTAGTCATGCCTTTGAAGGGCTTTGGGGAGC
ACAATTTGCAAAATTGGAGAACTCAGATTACTTCTCTTTATGGGGGACCATTGGAATTCT
TGTTTGTAGTAGAAAGCAAAGATGATCCAGCTTATCGTGCCGTCTCCCGATTGATTGTAG
AGTACAAGGACAAATTGGACGCAAAGGTGGTTGTAGCTGGGTTTTCAACAACTTGTAGCC
AGAAAATTCATAATCAGTTAATTGGTGTTGAAAAGATGCACAAGGACAGCAAATATGTTC
TATTTCTGGACGATGATGTCAGACTGCATCCTGGGACAGTCGGAGCTCTCACAAAAGAAA
TGGAGAAGAACCCTGAGATATTTATCCAAACGGGATACCCTCTTGACTTGCCTTCTGGCA
GCTTGGGAAGCTATTGCATATATGAATATCACATGCCCTGTTCGATTGGATTTGCAACTG
GCGGGAGGACTTTC

Homology of Contig TA45304_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g67870.1	518	2e-135	protein\|expressed protein
Brachypodium v1_2	Bradi2g58060.1	518	4e-140
Arabidopsis v10	AT2G19880.2	520	1e-120	Nucleotide-diphospho-sugar transferases superfamily protein \| chr2:8581578-8585118 FORWARD LENGTH=520