barSeed - Barley Seed Development Database

Probe CUST_5387_PI390587928

Source Contig U35_44157

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5387_PI390587928	Hv_44K_v2	TCCATCAAGTACACGCTGCAAAACCTGGAGAAATGGGCGGTCCCTGAGAAGGCTCCTACG	116	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365254	1774	2e-24	267 - 326	100	60 / 60	plus	ABC05376 ABC16828
MLOC	MLOC_66220.2	527	2e-24	272 - 331	100	60 / 60	plus	None
MLOC	MLOC_66220.1	688	2e-24	394 - 453	100	60 / 60	plus	None
JLOC1	JLOC1_43619.2	508	8e-25	356 - 415	100	60 / 60	plus
JLOC1	JLOC1_43619.1	508	8e-25	356 - 415	100	60 / 60	plus
Harvest21	ABC41682	279	3e-25	117 - 176	100	60 / 60	plus
Harvest35	U35_44157	279	3e-25	117 - 176	100	60 / 60	plus

Contig Sequence (279 bp)

>U35_44157 279 Hv_44K_v2
TACCCGCTGAGTTTAAGCATATAAAGAAGGAGGAGGAGATCTTCGACGTGCTCCGCGATG
ACCTCGGCAAGCACCGGACTGAATCCTTCAGGGACGAGGTTGGGGTTCTCGTCAAATCCA
TCAAGTACACGCTGCAAAACCTGGAGAAATGGGCGGTCCCTGAGAAGGCTCCTACGCCGT
TGGTTTCTTTTCCGGCGACGGCGCTGGTGTTACCGGAGCCGCTCGGGGTCATGCTCATTN
TCTACTGCTGGAATTTTCCATTAGTCTTAGCTCTTGAGC

Homology of Contig U35_44157 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None