barSeed - Barley Seed Development Database

Probe CUST_5379_PI390587928

Source Contig U35_32188

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5379_PI390587928	Hv_44K_v2	TAACAATCCATTCGGGCAGTCATCTGCCAGCCCTTTTGGGCAGACGTCAACCAACCCCTT	238	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250437.1	3205	2e-24	131 - 190	100	60 / 60	plus	ABC05592 ABC05595
MLOC	MLOC_66182.3	2415	2e-24	1799 - 1858	100	60 / 60	minus	ABC05595
MLOC	MLOC_66182.2	2175	2e-24	1725 - 1784	100	60 / 60	minus	ABC05595
MLOC	MLOC_66182.1	2398	2e-24	2004 - 2063	100	60 / 60	minus	ABC05595
JLOC1	JLOC1_43592.3	2441	8e-25	384 - 443	100	60 / 60	plus
JLOC1	JLOC1_43592.2	2185	8e-25	236 - 295	100	60 / 60	plus
JLOC1	JLOC1_43592.1	2095	8e-25	230 - 289	100	60 / 60	plus
Harvest35	U35_32188	492	3e-25	239 - 298	100	60 / 60	plus
Harvest35	U35_4593	613	3e-25	242 - 301	100	60 / 60	plus

Contig Sequence (492 bp)

>U35_32188 492 Hv_44K_v2
AAAGACACAGACGTCGCGGCCCCACCCTCCAGCCTCAGATCTAGATCCCCCTCCTCCACC
TTTCGATTATCTTTTCGTCTCCTCCTGAACCAACATCAACACCACATCGATCGACAGCGA
GGAAGGAGAAGCAACCCCCACCCCGGCCGCCGCCGCAGCCGCCGACGGCCAGGTGACCCA
CCATCTCCTCCTCCGTCCGCCGCAGCCGCCACCACCATCAACCAGCCATGTTCGGCGCTA
ACAATCCATTCGGGCAGTCATCTGCCAGCCCTTTTGGGCAGACGTCAACCAACCCCTTCG
GGACCCAACAGGGCTTTGGCCAGCCCAGCACCACCAACAACAATCCCTTCGCACCCAAAC
CCTTCGGCAGCCCGACCCCTGCATTTGGGGCGCCGACAGGGACCACCTCGCCTTTTGGCG
CTACCTCCACCTTTGGCCAGCCATCCGCTCCGGCCTTTGGCGCCACATCAACTGGNCGCC
TTGGCCAGCAGT

Homology of Contig U35_32188 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None