barSeed - Barley Seed Development Database

Probe CUST_5352_PI390587928

Source Contig U35_3102

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5352_PI390587928	Hv_44K_v2	TGCTGCTGGGATCCGTTAGCTTTTTATTACGACATATTTCATATTTGTGCCGTGAAAAAA	799	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70912.2	2402	7e-23	1194 - 1250	100	57 / 57	minus	ABC07698 ABC07699
MLOC	MLOC_70912.10	1539	7e-23	419 - 475	100	57 / 57	minus	ABC07698 ABC07699
MLOC	MLOC_70912.1	2258	7e-23	1194 - 1250	100	57 / 57	minus	ABC07698 ABC07699
MLOC	MLOC_70912.5	1745	7e-23	515 - 571	100	57 / 57	minus	ABC07698 ABC07699
MLOC	MLOC_70912.6	1661	7e-23	530 - 586	100	57 / 57	minus	ABC07698 ABC07699
MLOC	MLOC_70912.7	1651	7e-23	530 - 586	100	57 / 57	minus	ABC07698 ABC07699
MLOC	MLOC_70912.3	1821	7e-23	695 - 751	100	57 / 57	minus	ABC07698 ABC07699
JLOC1	JLOC1_47083.5	2327	4e-23	934 - 990	100	57 / 57	plus
JLOC1	JLOC1_47083.4	2398	4e-23	1005 - 1061	100	57 / 57	plus
JLOC1	JLOC1_47083.3	2728	4e-23	1005 - 1061	100	57 / 57	plus
JLOC1	JLOC1_47083.2	2718	4e-23	995 - 1051	100	57 / 57	plus
Harvest21	ABC07698	1677	3e-25	1607 - 1666	100	60 / 60	plus	ABC07698
Harvest35	U35_3102	870	3e-25	800 - 859	100	60 / 60	plus

Contig Sequence (870 bp)

>U35_3102 870 Hv_44K_v2
CTTCATCGGTCGGTGGAGTAAACTGCAGACAGTCGCGTGGACTTCGGGAAGTCCATCGCA
TGAAAAGAAGCTGAGGAGTTGAGGGCAGAGCCGGTCGCCCTCTCGCCCTTGGCTCGGTCT
CTTTGTTCTCAGCAAATGCTACCGCCACTGGCTCCTTGGAAGACAGTGGCGCCATGTGGG
CTGCAAGAGAAGAGAAGAGAAGAGAGTGGCGTGGGGGCATCCAGCATGTGGATTGACGGC
CAGGACCTGGCCACATGCAGCTGCCCGACTGGAGCACCAGGCCAAGCGCTCCTACTGGCT
CTGGCCGAAGACAATGAACTGCTATGTGCAGCTGCTCGACTGGAGCACCAGGCCAAGCGC
TCCTATTGCGTCTGGCCGAAGACAATGAACTGCCACGTGCAGCTGCCTGACTGGAGCACC
AGGCTCTGCGCTCCTATTGCGTCTGGGTGAAGCCGCACTGGTGTGAAGCTACGGGACTCG
AGCTGGAGCAGATGAAGCCGCACTGGTGTGAAGGTGCGTGCCTTGAGCCGGAGCAGAGGC
AAGCTGCATCGACTGCCGCCCCCTGTCATTGCCACCCTTGCTCTCAGGGGCCTCCAGGCA
ACTGCCGCCGCTGATGATGATGACGACGAAGAGTTTCAAGTCCTGGCTTTGTGTTGTCTT
TAAGATAAGATTCTTCAATTCGAACCTGGTACTAGTATAGAGTACTAAGTATGTGTCTGT
ACATACATGGTAGTAGTAGTTGGGTGACCCCCAACTTGTCTATTAACTGACTATGTTGTT
ATGTTATTACAACTTGAGATGCTGCTGGGATCCGTTAGCTTTTTATTACGACATATTTCA
TATTTGTGCCGTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_3102 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None