barSeed - Barley Seed Development Database

Probe ABC07698

Source Contig ABC07698

barSeed

Links

Affymetrix Source Sequence (1677 bp)

>ABC07698 1677
TGAAAGGAGTTTGACTAGCACTGCATCTAGCAGCAGATCAAATAATAGAAGCAGGATTGA
CAAGGAGCCTCCAGTCAATAGAGGCAGGCAAGGCAATAGGGTGGCGATATTTCGAGACCG
TGACTCTGATCGCAAGGATCCTGATTATGACAGAAGCTATGACAGGTATATGCAAAGATT
TGATCCTGGATTTGGTTTTAATGGAGGCGCGTACACCATTCAACCTTTGTATGCTCCTGC
TGTTACCTACAACACTGAGTTCCCCCAGCTTGGGTCGCCACAAATGTCTCCTGTTCCTGT
TGAACAGCAGCAGCCTCATCCAATGGCTCAGCACATGCCTGGGCCCTGGTCGCCGGCTCA
ATCACCTAATGCAGTTGGCTACAGGCCTCCAGATGGTGTTATGCCACCCTACAGTCCTGG
TCAAGCTGGTGCTCCTGTCAGGTCGTCTGTTTTCATGCATGCTTCCCAGCAATATGCTAT
GCCTTCACGCCCAGGAGTCACGTTTGTACATCCACAGGATTCCATGCGACCATTTGCACA
GACTCACCACCAACAACAATCTGAAGCTAGTCTACGGTTAGCCCGGCCCCGGTGAGGGGC
CCTGGGCATGCCTGCTCCTGCCAGCACACGCTGAACTTCCAAATCAAATAAAATGGGATA
TCCGTCTCATTTCTGGCTGGCAGGAGCAGGCATGAAAGAACCGAGAAGCGCCGGGCCGAG
CTAGTCATCCACCTGATCTTGTCATGCCCGTGCGCTTCTCGGTGTTGTTGCTCCCTGCAC
ATTGAGATGCAGGCGGGGCACGTACTCCTTCATCGGTCGGTGGAGTAAACTGCAGACAGT
CGCGTGGACTTCGGGAAGTCCATCGCATGAAAAGAAGCTGAGGAGTTGAGGGCAGAGCCG
GTCGCCCTCTCGCCCTTGGCTCGGTCTCTTTGTTCTCAGCAAATGCTACCGCCACTGGCT
CCTTGGAAGACAGTGGCGCCATGTGGGCTGCAAGAGAAGAGAAGAGAAGAGAGTGGCGTG
GGGGCATCCAGCATGTGGATTGACGGCCAGGACCTGGCCACATGCAGCTGCCCGACTGGA
GCACCAGGCCAAGCGCTCCTACTGGCTCTGGCCGAAGACAATGAACTGCTATGTGCAGCT
GCTCGACTGGAGCACCAGGCCAAGCGCTCCTATTGCGTCTGGCCGAAGACAATGAACTGC
CACGTGCAGCTGCCTGACTGGAGCACCAGGCTCTGCGCTCCTATTGCGTCTGGGTGAAGC
CGCACTGGTGTGAAGCTACGGGACTCGAGCTGGAGCAGATGAAGCCGCACTGGTGTGAAG
GTGCGTGCCTTGAGCCGGAGCAGAGGCAAGCTGCATCGACTGCCGCCCCCTGTCATTGCC
ACCCTTGCTCTCAGGGGCCTCCAGGCAACTGCCGCCGCTGATGATGATGACGACGAAGAG
TTTCAAGTCCTGGCTTTGTGTTGTCTTTAAGATAAGATTCTTCAATTCGAACCTGGTACT
AGTATAGAGTACTAAGTATGTGTCTGTACATACATGGTAGTAGTAGTTGGGTGACCCCCA
ACTTGTCTATTAACTGACTATGTTGTTATGTTATTACAACTTGAGATGCTGCTGGGATCC
GTTAGCTTTTTATTACGACATATTTCATATTTGTGCCGTGAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK366111	2554	0.0	943 - 2554	100	1612 / 1612	CUST_5351_PI390587928 CUST_28871_PI390587928	ABC07698 ABC07699 ABC38666
MLOC_70912.6	1661	0.0	530 - 1654	100	1125 / 1125	CUST_5352_PI390587928	ABC07698 ABC07699
MLOC_70912.3	1821	0.0	695 - 1819	100	1125 / 1125	CUST_5352_PI390587928	ABC07698 ABC07699
MLOC_70912.10	1539	0.0	419 - 1539	100	1121 / 1121	CUST_5352_PI390587928	ABC07698 ABC07699
MLOC_70912.7	1651	0.0	530 - 1644	99	1115 / 1125	CUST_5352_PI390587928	ABC07698 ABC07699
MLOC_70912.1	2258	0.0	1194 - 2258	100	1065 / 1065	CUST_5352_PI390587928	ABC07698 ABC07699
MLOC_70912.9	1359	0.0	405 - 1359	100	955 / 955	None	ABC07698 ABC07699
MLOC_70912.8	1263	0.0	321 - 1263	99	943 / 953	None	ABC07698 ABC07699
MLOC_70912.4	1438	0.0	524 - 1438	100	915 / 915	None	ABC07698 ABC07699
MLOC_70912.2	2402	0.0	1871 - 2389	100	519 / 519	CUST_5352_PI390587928	ABC07698 ABC07699
MLOC_70912.5	1745	0.0	1192 - 1710	100	519 / 519	CUST_5352_PI390587928	ABC07698 ABC07699
MLOC_70914.1	820	1e-114	594 - 818	100	225 / 225	None	ABC07698 ABC07699
MLOC_70912.11	1481	0.0	405 - 845	100	441 / 441	None	ABC07698 ABC07699
MLOC_25248.1	546	2e-168	191 - 546	96	344 / 357	None	ABC07698 ABC38666
MLOC_46423.1	230	1e-100	1 - 230	96	220 / 230	None	ABC07698 ABC38666
MLOC_2630.1	220	1e-100	12 - 220	99	206 / 209	None	ABC07698
MLOC_49267.1	895	1e-80	175 - 341	99	166 / 167	CUST_5351_PI390587928 CUST_28871_PI390587928	ABC07698
MLOC_30856.1	190	4e-80	1 - 190	95	181 / 190	None	ABC07698
MLOC_10864.1	944	2e-77	669 - 835	98	164 / 167	CUST_5351_PI390587928	ABC07698
MLOC_30676.1	262	3e-76	95 - 262	98	164 / 168	None	ABC07698
MLOC_28342.1	985	1e-70	216 - 382	96	160 / 167	CUST_5351_PI390587928	ABC07698
MLOC_32212.1	487	2e-68	346 - 487	100	142 / 142	None	ABC07698
MLOC_49267.2	172	2e-63	1 - 136	99	135 / 136	CUST_28871_PI390587928	ABC07698
MLOC_54702.1	125	5e-54	1 - 125	98	122 / 125	None	ABC07698
MLOC_8097.1	300	3e-51	1 - 114	99	113 / 114	None	ABC07698