barSeed - Barley Seed Development Database

Probe CUST_5351_PI390587928

Source Contig U35_3103

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5351_PI390587928	Hv_44K_v2	AGTTAATTTGCCTCAAGAAGAGACCAGCGCTGTGGCCACCAAAGTAGCTATTAAGCAAAG	421	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366111	2554	2e-24	628 - 687	100	60 / 60	plus	ABC07698 ABC07699 ABC38666
MLOC	MLOC_49267.1	895	2e-24	597 - 656	100	60 / 60	minus	ABC07698
MLOC	MLOC_49059.1	401	2e-24	42 - 101	100	60 / 60	minus	None
MLOC	MLOC_52892.1	330	7e-23	228 - 287	98	59 / 60	plus	None
MLOC	MLOC_28342.1	985	7e-23	638 - 697	98	59 / 60	minus	ABC07698
MLOC	MLOC_10864.1	944	7e-23	354 - 413	98	59 / 60	plus	ABC07698
MLOC	MLOC_40829.1	364	3e-21	204 - 263	97	58 / 60	minus	None
JLOC1	JLOC1_31547.1	679	8e-25	586 - 645	100	60 / 60	minus
JLOC1	JLOC1_31435.1	393	8e-25	43 - 102	100	60 / 60	minus
JLOC1	JLOC1_33923.1	330	4e-23	228 - 287	98	59 / 60	plus
JLOC1	JLOC1_7145.1	810	4e-23	375 - 434	98	59 / 60	plus
JLOC1	JLOC1_19026.1	183	5e-22	126 - 183	98	57 / 58	minus
Harvest21	ABC07700	629	3e-25	422 - 481	100	60 / 60	plus
Harvest21	ABC28193	716	1e-23	310 - 369	98	59 / 60	plus
Harvest35	U35_3103	629	3e-25	422 - 481	100	60 / 60	plus
Harvest35	U35_29037	716	1e-23	310 - 369	98	59 / 60	plus

Contig Sequence (629 bp)

>U35_3103 629 Hv_44K_v2
TCCTCTCCTCCTCCTCCTCCTCGGCCAACTCCGCCGCGCGCAGGGTCTCCTCCTCGCCCG
ACCTCGCCGACGACCACCAGCCGGACGCGCAGCAGCAGCAGCAGCAGGCCGACGATCCCG
TCGCGCAGGTCGACCAGTTCCTCCGCGAGGCCCTCGAGAAGCCCCGCGAGCGCCTCTCAG
TGCTACGGATGGAGCAAGACATTCTCAAGTTCCTCCGTGACCCTGGGCAGACGCAGTTCG
AGTTCCAGGGCCTTCCGACTTCGTACCTGCGTCTTGCTGCGCACCGTCTGGCACAGCATT
ATTTCCTGATATCAATCGCCCTGCCGGATAACAGCTTGCCTGATGGAACCAGTTCTCGGA
TCATCCTTCGTAAGACGTCTGCTGAATGCCGATTGCCTGCTGTCCGCCTAGCTGACATTC
CAGTTAATTTGCCTCAAGAAGAGACCAGCGCTGTGGCCACCAAAGTAGCTATTAAGCAAA
GGCCTCAGAAGAATCATCATGGGGGCGCAGGCGCAGGTGCTAACTCTTCCAGAGGCAACC
TTCAGAAAAGCGTTGAGGAGAGGAAAGAGGAATACAACAGGGCACGTGCTCGCATATTTA
ACAACAGCAGTGGTAGCAGTAGTCCGGTT

Homology of Contig U35_3103 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g39462.3	318	4e-81	protein\|nucleic acid binding protein, putative, expressed
Brachypodium v1_2	Bradi4g38500.1	465	2e-88
Arabidopsis v10	None