barSeed - Barley Seed Development Database

Probe CUST_5316_PI390587928

Source Contig U35_3138

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5316_PI390587928	Hv_44K_v2	CTGACACCAAAGAGGATGTCAAGTTGTTTGTAAGAAATCACAAGTATGGTCTTGTTATTT	854	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.156	1.550	1.046	1.180	1.013	1.296
Raw	5.242	111.375	57.822	107.780	31.149	44.393

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65259.3	808	2e-24	698 - 757	100	60 / 60	plus	ABC07171
MLOC	MLOC_65259.2	951	2e-24	863 - 922	100	60 / 60	plus	ABC07171
MLOC	MLOC_65259.1	1133	2e-24	975 - 1034	100	60 / 60	plus	ABC07171
JLOC1	JLOC1_42932.1	1015	8e-25	878 - 937	100	60 / 60	plus
Harvest21	ABC07172	648	3e-25	32 - 91	100	60 / 60	minus
Harvest21	ABC07171	965	3e-25	855 - 914	100	60 / 60	plus	ABC07171
Harvest35	U35_3138	965	3e-25	855 - 914	100	60 / 60	plus

Contig Sequence (965 bp)

>U35_3138 965 Hv_44K_v2
GTCCCCCGGGCTGAGGAATTCGGACGAGGGCGGAAGGAGGTCTGAAGCTGCTGGGCCTGA
CGGTGAGCCCGTTCGTGATCCGTGTACGCATGGCACTGCAGATGAAACGCGTGGGCTACG
AGTACATGGAGCAGGACCTGTTCACCAAGGGCGAGCTCCTCCTCAAGTCCAACCCGGTGC
ACATGAAGGTCCCGGTGCTCATCCACGACGGCAAATCCATCTGCGAGTCGCTGGCCATCG
TGCAGTACGTCGACGAGGTCTGGGCCGCCACGGGCACCTCCATCCTCCCCGCCGACCCCT
ACGACCGCGCCGCCGCTCGCTTCTGGGCCGCCTACGCCGACAGCAAGCTCTTGCCTGCGT
GGGTGGGCATCATGTGGGCGGCGACGGAGGAGGAGAGAGCGGAGAAGGTCGGCGACACGC
TCGCGGCTATCGGCCAACTGGAGGAGGCGTTCGGAAAGTGCTCCAACGGAAAGCCCTTCT
TCGCCGGCGATTCCGTCGGCTACCTCGATCTCGTCGTCGGTTCGCAGTTGCTCTGGTTCG
AGGTGCTGCGGAAGATGTTCGGCGTCGTGGTCATTGAGGCCTGCAGGGCTCCCTTCTTGG
CCGCGTGGGTGAAGCGGTTTTGGGAGACTGATACGGCGAAGGCGGTGGTGCCGGACGTTG
GCACGGCGGCGGAGTACCTGAAGAAGCTTCAGTCTCATCGGGCTGGTGCCACGGTTGCCC
AGTTGCTGTCGTGACAAAATCACAAAAGTGCATGTAGAAATTGTTGATCCCGGTAGCCAG
TTTACAGCGTATTTTTGTTTAGGCCAGCTCTGGTCATGAGTTGCAAGGATGCAAAGAATG
AAGAGGTTTCCATCCTGACACCAAAGAGGATGTCAAGTTGTTTGTAAGAAATCACAAGTA
TGGTCTTGTTATTTTTTTAAAGAGGAATATATTAATATCAAGCAGGTATGGTCTTGCTAT
TTATC

Homology of Contig U35_3138 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g38710.1	234	3e-85	protein\|glutathione S-transferase, putative, expressed
Brachypodium v1_2	Bradi3g31860.1	248	2e-113
Arabidopsis v10	AT1G10370.1	227	2e-51	\| Symbols: GST30, ATGSTU17, GST30B, ERD9 \| Glutathione S-transferase family protein \| chr1:3397274-3398273 REVERSE LENGTH=227