barSeed - Barley Seed Development Database

Probe CUST_5303_PI390587928

Source Contig U35_3780

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5303_PI390587928	Hv_44K_v2	TTTCCATGCCATTTGCAATTTCTTCTTTGAAATGGTTTGTGATTTGTTGTGTGGAGAGAC	744	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19653.3	848	2e-24	742 - 801	100	60 / 60	plus	ABC10932
MLOC	MLOC_19654.2	3951	2e-24	1846 - 1905	100	60 / 60	plus	ABC10932 ABC18282
MLOC	MLOC_19654.1	2588	2e-24	650 - 709	100	60 / 60	plus	ABC10932 ABC18282
MLOC	MLOC_19653.2	1657	2e-24	780 - 839	100	60 / 60	plus	ABC10932 ABC18282
JLOC1	JLOC1_13618.1	2611	8e-25	2047 - 2106	100	60 / 60	minus
JLOC1	JLOC1_13617.3	2101	8e-25	1273 - 1332	100	60 / 60	plus
JLOC1	JLOC1_13617.2	1634	8e-25	806 - 865	100	60 / 60	plus
JLOC1	JLOC1_13617.1	1486	8e-25	658 - 717	100	60 / 60	plus
Harvest21	ABC10932	902	3e-25	745 - 804	100	60 / 60	plus	ABC10932
Harvest35	U35_3780	1150	3e-25	745 - 804	100	60 / 60	plus

Contig Sequence (1150 bp)

>U35_3780 1150 Hv_44K_v2
CGGGCTGTGTTCTCCTTTCCCCCAAATCGATCGACGGACGGAAGAAACTCCCATGGCGAT
TTGGTCCTCCTAGCAAGCAAGCAAGCAGGTAGCTCTTCCTCCCGATTCCCCTTCCTTCCT
TCTCGTCCGCCCGGCCGGCCGCCTGCTACATCGACGGAGCCTTTCTTCCACCGCCGGCCG
CCGCATCATCTAATCTGCCGCCGCCGAGTGCCCAAGGAGCAGGAAGCACCGGGGCTCTTG
GTCGGTCAGGGTCAGGGAGCAACCAAGGAGATATATAGATAGATAGATGGCGGAATTGGT
CGGACCGCGGGTGTACAGCTGCTCCCACTGCCGGAACCACGTCTGCCTCCACGACGATAT
CATCTCCAAGGCCTTCCAGGGGAGGAATGGCCGTGCGTTTCTCTTCTCCCACGCCATGAA
CGTTACCACGGGGGCCAAGGAGGACCGGCAGCTCATGACGGGGCTTCACACCGTCGCCGA
CATCCATTGCCGTGACTGCCGTGAGGTGCTCGGATGGAAGTACGAGCGAGCCTACGAGGA
GTCCCAGAAGTACAAGGAGGGCAAGTTCATATTTGAAAAGGCCAAGATCGTGCAGGAGAA
TTGGTAGCAAATAATTGGAAGAAAGATTCAACCAATCCAAGATCGTGCCAGACAGAATGC
TCTCTTTATGATGGATCCTCCATGCCTTTGTACATAGCAGCAGTCCGTTTTCTTCTTTTC
AAAACTAGCAGTCTGTTGGTCTTATTTCCATGCCATTTGCAATTTCTTCTTTGAAATGGT
TTGTGATTTGTTGTGTGGAGAGACAGAATTATCATGTTCATTTGTGTTGGAACCATTTTC
TCATTGATCATAGATAAGATCGAAGGTTTGACAAATATCACAGGACCAAACAGTTCGTAG
GTATTACTGTTGATGTCTGTTACTCTTGGGTAGCTTCCCATAGGGTGAATCTTGATCCGG
TATTGAAATTTCGGGAAGTACTGAGCCATCGTGTGTAACAGAAGAGCAGCCTGACCCCAG
GCACCATTTATCTCATCCCACTCAACCTGTACATTAGGCAGACGACCGAGACGGAAGCTG
TTTATTGTTCCAATCACTTCATTATGTGAAATATAGAATGCATCATCGAGAACATTTGTG
CGCTTTAACA

Homology of Contig U35_3780 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g35020.2	107	4e-68	protein\|yippee zinc-binding protein, putative, expressed
Brachypodium v1_2	Bradi4g16460.4	107	2e-71
Arabidopsis v10	AT4G27745.1	106	2e-57	Yippee family putative zinc-binding protein \| chr4:13840530-13841279 FORWARD LENGTH=106